miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14480 3' -57.6 NC_003521.1 + 92304 0.65 0.939931
Target:  5'- aGGCGCgggaggagGCG-CAGccGCGGCAUGGg -3'
miRNA:   3'- -UCGCGaagga---CGCaGUC--UGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 160773 0.66 0.936267
Target:  5'- cGCGCgugCCgccgGCGgCAcGCgGGCGCGGg -3'
miRNA:   3'- uCGCGaa-GGa---CGCaGUcUG-CCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 25555 0.66 0.931492
Target:  5'- cGGaCGCUg-UUGUG-CAGGCGGcCGCGGg -3'
miRNA:   3'- -UC-GCGAagGACGCaGUCUGCC-GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 55018 0.66 0.936267
Target:  5'- aGGCGCagcgCCaGCGUCGG-CGGCucCGa -3'
miRNA:   3'- -UCGCGaa--GGaCGCAGUCuGCCGu-GCc -5'
14480 3' -57.6 NC_003521.1 + 38910 0.66 0.921287
Target:  5'- cGGCGUccccgcCCUGUGUCGuGGCGGCAg-- -3'
miRNA:   3'- -UCGCGaa----GGACGCAGU-CUGCCGUgcc -5'
14480 3' -57.6 NC_003521.1 + 210555 0.66 0.931492
Target:  5'- gAGCGCgcccgCCaGgGUCAGcUGGcCACGGc -3'
miRNA:   3'- -UCGCGaa---GGaCgCAGUCuGCC-GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 50779 0.66 0.926499
Target:  5'- cGCGCggcggUCCUG-GUCGauCGGCgACGGu -3'
miRNA:   3'- uCGCGa----AGGACgCAGUcuGCCG-UGCC- -5'
14480 3' -57.6 NC_003521.1 + 115240 0.66 0.921287
Target:  5'- -aCGCaguacaUCUGCGUC-GAgGGCACGGa -3'
miRNA:   3'- ucGCGaa----GGACGCAGuCUgCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 86153 0.66 0.924959
Target:  5'- uAGCGC-UCCaGCGUCucgcugccggccucGGccaGCGGCACGu -3'
miRNA:   3'- -UCGCGaAGGaCGCAG--------------UC---UGCCGUGCc -5'
14480 3' -57.6 NC_003521.1 + 187851 0.66 0.928523
Target:  5'- cGGC-CUUCCucaccgccuguugcaUGgCGgucaccaccUCGGGCGGCACGGg -3'
miRNA:   3'- -UCGcGAAGG---------------AC-GC---------AGUCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 153702 0.66 0.921287
Target:  5'- cGCGC-UCCUugggacgcGCGUCcaccaGCGGCACGa -3'
miRNA:   3'- uCGCGaAGGA--------CGCAGuc---UGCCGUGCc -5'
14480 3' -57.6 NC_003521.1 + 168399 0.66 0.931492
Target:  5'- uGGCGUUgccgCCguugGUGgcuagggCGGGCGGCAgGGc -3'
miRNA:   3'- -UCGCGAa---GGa---CGCa------GUCUGCCGUgCC- -5'
14480 3' -57.6 NC_003521.1 + 76177 0.66 0.931492
Target:  5'- cGuCGCgggCCUGCGUgAGGCGcCACaGGa -3'
miRNA:   3'- uC-GCGaa-GGACGCAgUCUGCcGUG-CC- -5'
14480 3' -57.6 NC_003521.1 + 38224 0.66 0.926499
Target:  5'- aGGCGCagggcggCCU-CGgCGGGCGGgGCGGa -3'
miRNA:   3'- -UCGCGaa-----GGAcGCaGUCUGCCgUGCC- -5'
14480 3' -57.6 NC_003521.1 + 35213 0.66 0.921287
Target:  5'- gGGCGCgcgggucggaUCgaGCGUCcucggggcgcgAGACGGCACa- -3'
miRNA:   3'- -UCGCGa---------AGgaCGCAG-----------UCUGCCGUGcc -5'
14480 3' -57.6 NC_003521.1 + 238452 0.66 0.926499
Target:  5'- aGGCGCagggcggCCU-CGgCGGGCGGgGCGGa -3'
miRNA:   3'- -UCGCGaa-----GGAcGCaGUCUGCCgUGCC- -5'
14480 3' -57.6 NC_003521.1 + 155898 0.66 0.926499
Target:  5'- gAGCGCacgcCCUGCGagCAGGcCGGCuACGc -3'
miRNA:   3'- -UCGCGaa--GGACGCa-GUCU-GCCG-UGCc -5'
14480 3' -57.6 NC_003521.1 + 171650 0.66 0.926499
Target:  5'- uAGCGCg-CCgcggcggGCGUCGGgagcgucgGCGGCAUGa -3'
miRNA:   3'- -UCGCGaaGGa------CGCAGUC--------UGCCGUGCc -5'
14480 3' -57.6 NC_003521.1 + 133593 0.66 0.915857
Target:  5'- cGCGCUcuucgagccUCCUGCuggagcacUguGugGGCAUGGc -3'
miRNA:   3'- uCGCGA---------AGGACGc-------AguCugCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 98404 0.66 0.9358
Target:  5'- cGGCGCUgcugcuguuauugUCCgGUGgu-GGCGGgGCGGg -3'
miRNA:   3'- -UCGCGA-------------AGGaCGCaguCUGCCgUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.