miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14480 3' -57.6 NC_003521.1 + 1016 0.7 0.775397
Target:  5'- uGGCGUcaacaccucgucUUCCUGC--UAGGCGGaCACGGa -3'
miRNA:   3'- -UCGCG------------AAGGACGcaGUCUGCC-GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 14107 0.67 0.90375
Target:  5'- gGGaCGCUgCCUGUGUCuggguccgccgaaGGGCuGGCACGu -3'
miRNA:   3'- -UC-GCGAaGGACGCAG-------------UCUG-CCGUGCc -5'
14480 3' -57.6 NC_003521.1 + 14924 0.72 0.619225
Target:  5'- cGGCGCUUCgaGCGcgagcggcagcgcCAGACGcGCAUGGa -3'
miRNA:   3'- -UCGCGAAGgaCGCa------------GUCUGC-CGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 16088 0.75 0.489578
Target:  5'- cGCGCUggccgCCUGCGUCGG-CGaGCaccACGGg -3'
miRNA:   3'- uCGCGAa----GGACGCAGUCuGC-CG---UGCC- -5'
14480 3' -57.6 NC_003521.1 + 17022 0.67 0.878786
Target:  5'- cGGCGCaggCCcGuCGUCuGGCGGCccACGGc -3'
miRNA:   3'- -UCGCGaa-GGaC-GCAGuCUGCCG--UGCC- -5'
14480 3' -57.6 NC_003521.1 + 17511 0.69 0.810058
Target:  5'- cGGCGgUUCCcgGCcc--GGCGGCGCGGg -3'
miRNA:   3'- -UCGCgAAGGa-CGcaguCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 17606 0.67 0.891983
Target:  5'- aGGgGCUcuaCCUGCGUCAauacgaccccGACGcGCuGCGGa -3'
miRNA:   3'- -UCgCGAa--GGACGCAGU----------CUGC-CG-UGCC- -5'
14480 3' -57.6 NC_003521.1 + 18445 0.67 0.884163
Target:  5'- cGCGCggCCUGUGccgcuucgaccgCGGGCuGCGCGGc -3'
miRNA:   3'- uCGCGaaGGACGCa-----------GUCUGcCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 19867 0.67 0.898271
Target:  5'- cAGCGCUcCCUGCu---GACGGCcgcguCGGc -3'
miRNA:   3'- -UCGCGAaGGACGcaguCUGCCGu----GCC- -5'
14480 3' -57.6 NC_003521.1 + 20561 0.67 0.891983
Target:  5'- gGGCGCUacgaCUGCuUCAGAugcaagaaCGGCACGc -3'
miRNA:   3'- -UCGCGAag--GACGcAGUCU--------GCCGUGCc -5'
14480 3' -57.6 NC_003521.1 + 23557 0.71 0.681678
Target:  5'- cAGCGCcugcUCCU-CGUCcgucaugguGGugGGCGCGGg -3'
miRNA:   3'- -UCGCGa---AGGAcGCAG---------UCugCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 23629 0.67 0.910211
Target:  5'- cGcCGUggCCUGCcu-GGGCGGCAUGGa -3'
miRNA:   3'- uC-GCGaaGGACGcagUCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 24399 0.67 0.876049
Target:  5'- cGGCGCcgggCCcGCGgagcauagaaagcCAGACGGCGCaGGg -3'
miRNA:   3'- -UCGCGaa--GGaCGCa------------GUCUGCCGUG-CC- -5'
14480 3' -57.6 NC_003521.1 + 25555 0.66 0.931492
Target:  5'- cGGaCGCUg-UUGUG-CAGGCGGcCGCGGg -3'
miRNA:   3'- -UC-GCGAagGACGCaGUCUGCC-GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 28839 0.67 0.88811
Target:  5'- cGGCGCcuggacgacgagCUGCGgCGGcGCGGCACGGu -3'
miRNA:   3'- -UCGCGaag---------GACGCaGUC-UGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 32096 0.74 0.545637
Target:  5'- cAGCGCca--UGCGUUuGGCGGCGCGGc -3'
miRNA:   3'- -UCGCGaaggACGCAGuCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 35005 0.69 0.810058
Target:  5'- cAGCGagcgCUUGCGUCGugcccGGCGGaCGCGGu -3'
miRNA:   3'- -UCGCgaa-GGACGCAGU-----CUGCC-GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 35213 0.66 0.921287
Target:  5'- gGGCGCgcgggucggaUCgaGCGUCcucggggcgcgAGACGGCACa- -3'
miRNA:   3'- -UCGCGa---------AGgaCGCAG-----------UCUGCCGUGcc -5'
14480 3' -57.6 NC_003521.1 + 35724 0.68 0.864785
Target:  5'- aGGCGCUgaagUCCUGCagaUCAGccacaugcgguuGCGGCugGa -3'
miRNA:   3'- -UCGCGA----AGGACGc--AGUC------------UGCCGugCc -5'
14480 3' -57.6 NC_003521.1 + 38224 0.66 0.926499
Target:  5'- aGGCGCagggcggCCU-CGgCGGGCGGgGCGGa -3'
miRNA:   3'- -UCGCGaa-----GGAcGCaGUCUGCCgUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.