miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14480 3' -57.6 NC_003521.1 + 125537 1.11 0.002732
Target:  5'- cAGCGCUUCCUGCGUCAGACGGCACGGg -3'
miRNA:   3'- -UCGCGAAGGACGCAGUCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 67556 0.77 0.401967
Target:  5'- uGCGCcaaCUGUGUCAGGCGGCgggccccGCGGg -3'
miRNA:   3'- uCGCGaagGACGCAGUCUGCCG-------UGCC- -5'
14480 3' -57.6 NC_003521.1 + 187593 0.77 0.402785
Target:  5'- -cCGCUUUCUGCuGcCGGugGGCACGGc -3'
miRNA:   3'- ucGCGAAGGACG-CaGUCugCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 45075 0.76 0.419367
Target:  5'- cGCGCgUCCUGCGUgAGGUGGCGCa- -3'
miRNA:   3'- uCGCGaAGGACGCAgUCUGCCGUGcc -5'
14480 3' -57.6 NC_003521.1 + 207261 0.76 0.419367
Target:  5'- cGGCGCUUcucgugCCUGCGUCAGGcCGGC-CGc -3'
miRNA:   3'- -UCGCGAA------GGACGCAGUCU-GCCGuGCc -5'
14480 3' -57.6 NC_003521.1 + 122604 0.75 0.489578
Target:  5'- cGGCGUuugcuguugUUCCUGCGUCGGcuCGGCGCu- -3'
miRNA:   3'- -UCGCG---------AAGGACGCAGUCu-GCCGUGcc -5'
14480 3' -57.6 NC_003521.1 + 16088 0.75 0.489578
Target:  5'- cGCGCUggccgCCUGCGUCGG-CGaGCaccACGGg -3'
miRNA:   3'- uCGCGAa----GGACGCAGUCuGC-CG---UGCC- -5'
14480 3' -57.6 NC_003521.1 + 52632 0.75 0.489578
Target:  5'- gGGUGa-UCCUGCGUCGGcccucGCGGCACGc -3'
miRNA:   3'- -UCGCgaAGGACGCAGUC-----UGCCGUGCc -5'
14480 3' -57.6 NC_003521.1 + 101156 0.75 0.507989
Target:  5'- cGGCGCggUCUGCGUCccucuccucAGACGGCguccgcgcccgGCGGg -3'
miRNA:   3'- -UCGCGaaGGACGCAG---------UCUGCCG-----------UGCC- -5'
14480 3' -57.6 NC_003521.1 + 108023 0.74 0.517304
Target:  5'- cGC-CUUCgucgGCGUCAGGCGGCgGCGGg -3'
miRNA:   3'- uCGcGAAGga--CGCAGUCUGCCG-UGCC- -5'
14480 3' -57.6 NC_003521.1 + 117491 0.74 0.526687
Target:  5'- cGGCGCUggggCCgucgGUGuUCGGACGGCugGa -3'
miRNA:   3'- -UCGCGAa---GGa---CGC-AGUCUGCCGugCc -5'
14480 3' -57.6 NC_003521.1 + 232397 0.74 0.536133
Target:  5'- cGCGCUggCUGCG-CcuGCGGCACGGc -3'
miRNA:   3'- uCGCGAagGACGCaGucUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 32096 0.74 0.545637
Target:  5'- cAGCGCca--UGCGUUuGGCGGCGCGGc -3'
miRNA:   3'- -UCGCGaaggACGCAGuCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 234093 0.74 0.555194
Target:  5'- gAGCGCUggCUGCGUCAGGCccuGCACc- -3'
miRNA:   3'- -UCGCGAagGACGCAGUCUGc--CGUGcc -5'
14480 3' -57.6 NC_003521.1 + 223931 0.73 0.584136
Target:  5'- aGGCGCggCCgaggGgGUCgAGGCGGcCGCGGg -3'
miRNA:   3'- -UCGCGaaGGa---CgCAG-UCUGCC-GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 90907 0.73 0.584136
Target:  5'- gGGCGCguuaucgUCCU-CGUCggaggaggGGugGGCGCGGg -3'
miRNA:   3'- -UCGCGa------AGGAcGCAG--------UCugCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 130497 0.73 0.584136
Target:  5'- gAGCGCggCC-GCGUCAuGAUGGCccuGCGGc -3'
miRNA:   3'- -UCGCGaaGGaCGCAGU-CUGCCG---UGCC- -5'
14480 3' -57.6 NC_003521.1 + 193278 0.73 0.593854
Target:  5'- gAGCGggUgCCgggacggGCGUCGGAguCGGCGCGGg -3'
miRNA:   3'- -UCGCgaA-GGa------CGCAGUCU--GCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 116663 0.73 0.600672
Target:  5'- aGGCGCUaucgCCUGCacggCAGcggcggcggaggcaGCGGCGCGGg -3'
miRNA:   3'- -UCGCGAa---GGACGca--GUC--------------UGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 197485 0.73 0.603598
Target:  5'- cGCGCg----GCGggcCGGACGGCGCGGa -3'
miRNA:   3'- uCGCGaaggaCGCa--GUCUGCCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.