miRNA display CGI


Results 1 - 20 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14480 3' -57.6 NC_003521.1 + 35005 0.69 0.810058
Target:  5'- cAGCGagcgCUUGCGUCGugcccGGCGGaCGCGGu -3'
miRNA:   3'- -UCGCgaa-GGACGCAGU-----CUGCC-GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 131093 0.71 0.691348
Target:  5'- cGCGCgggcUCCggacgGCG--GGGCGGCGCGGc -3'
miRNA:   3'- uCGCGa---AGGa----CGCagUCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 163718 0.71 0.720057
Target:  5'- aGGC-CgaaUCCUGCGUCGGgaugaGCGGCGcCGGc -3'
miRNA:   3'- -UCGcGa--AGGACGCAGUC-----UGCCGU-GCC- -5'
14480 3' -57.6 NC_003521.1 + 76234 0.7 0.757333
Target:  5'- gGGCGCgcacgUCCUcgaGCGUgAGGCGcgagaggcGCACGGc -3'
miRNA:   3'- -UCGCGa----AGGA---CGCAgUCUGC--------CGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 131339 0.7 0.766419
Target:  5'- cAGCGCUUCgCcccgUGcCGUCGcaagcucaucGGCGGCAUGGa -3'
miRNA:   3'- -UCGCGAAG-G----AC-GCAGU----------CUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 1016 0.7 0.775397
Target:  5'- uGGCGUcaacaccucgucUUCCUGC--UAGGCGGaCACGGa -3'
miRNA:   3'- -UCGCG------------AAGGACGcaGUCUGCC-GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 222745 0.69 0.79645
Target:  5'- cGCGCgccgUCUgggcuacggccacgGCGUCGGugGGguCGGc -3'
miRNA:   3'- uCGCGa---AGGa-------------CGCAGUCugCCguGCC- -5'
14480 3' -57.6 NC_003521.1 + 55735 0.69 0.801595
Target:  5'- cAGCGCcUCCcaGCGcgCGGGCGGCAgCGa -3'
miRNA:   3'- -UCGCGaAGGa-CGCa-GUCUGCCGU-GCc -5'
14480 3' -57.6 NC_003521.1 + 17511 0.69 0.810058
Target:  5'- cGGCGgUUCCcgGCcc--GGCGGCGCGGg -3'
miRNA:   3'- -UCGCgAAGGa-CGcaguCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 100916 0.71 0.690383
Target:  5'- uGgGC-UCCgcucGCGUCGGgauuuccGCGGCACGGg -3'
miRNA:   3'- uCgCGaAGGa---CGCAGUC-------UGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 155821 0.72 0.642701
Target:  5'- aGGUGCgggCCUGCGUCAucgguuaccAgGGCACGGu -3'
miRNA:   3'- -UCGCGaa-GGACGCAGUc--------UgCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 197485 0.73 0.603598
Target:  5'- cGCGCg----GCGggcCGGACGGCGCGGa -3'
miRNA:   3'- uCGCGaaggaCGCa--GUCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 67556 0.77 0.401967
Target:  5'- uGCGCcaaCUGUGUCAGGCGGCgggccccGCGGg -3'
miRNA:   3'- uCGCGaagGACGCAGUCUGCCG-------UGCC- -5'
14480 3' -57.6 NC_003521.1 + 122604 0.75 0.489578
Target:  5'- cGGCGUuugcuguugUUCCUGCGUCGGcuCGGCGCu- -3'
miRNA:   3'- -UCGCG---------AAGGACGCAGUCu-GCCGUGcc -5'
14480 3' -57.6 NC_003521.1 + 101156 0.75 0.507989
Target:  5'- cGGCGCggUCUGCGUCccucuccucAGACGGCguccgcgcccgGCGGg -3'
miRNA:   3'- -UCGCGaaGGACGCAG---------UCUGCCG-----------UGCC- -5'
14480 3' -57.6 NC_003521.1 + 232397 0.74 0.536133
Target:  5'- cGCGCUggCUGCG-CcuGCGGCACGGc -3'
miRNA:   3'- uCGCGAagGACGCaGucUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 32096 0.74 0.545637
Target:  5'- cAGCGCca--UGCGUUuGGCGGCGCGGc -3'
miRNA:   3'- -UCGCGaaggACGCAGuCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 234093 0.74 0.555194
Target:  5'- gAGCGCUggCUGCGUCAGGCccuGCACc- -3'
miRNA:   3'- -UCGCGAagGACGCAGUCUGc--CGUGcc -5'
14480 3' -57.6 NC_003521.1 + 130497 0.73 0.584136
Target:  5'- gAGCGCggCC-GCGUCAuGAUGGCccuGCGGc -3'
miRNA:   3'- -UCGCGaaGGaCGCAGU-CUGCCG---UGCC- -5'
14480 3' -57.6 NC_003521.1 + 193278 0.73 0.593854
Target:  5'- gAGCGggUgCCgggacggGCGUCGGAguCGGCGCGGg -3'
miRNA:   3'- -UCGCgaA-GGa------CGCAGUCU--GCCGUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.