Results 1 - 20 of 623 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14493 | 3' | -64 | NC_003521.1 | + | 214784 | 0.77 | 0.199812 |
Target: 5'- cCCGCuCGCCGCCGUCCUCuucaCCGCCg -3' miRNA: 3'- -GGCG-GUGGUGGCGGGAGccacGGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 155691 | 0.78 | 0.157874 |
Target: 5'- aUCGCCGCCgagggaggcuacguGCCGCCCgcCGcUGCCGCCg -3' miRNA: 3'- -GGCGGUGG--------------UGGCGGGa-GCcACGGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 194789 | 0.78 | 0.158975 |
Target: 5'- gUCGCUGCCGCCaugugGCCCUucaCGGUGCUGCUg -3' miRNA: 3'- -GGCGGUGGUGG-----CGGGA---GCCACGGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 4345 | 0.78 | 0.162693 |
Target: 5'- gCGCCACCGCCGCCggCGGUucgcucaucGCgGCCc -3' miRNA: 3'- gGCGGUGGUGGCGGgaGCCA---------CGgCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 171103 | 0.78 | 0.170365 |
Target: 5'- cCCGCCGuuACCGCguaCCUCaGG-GCCGCCg -3' miRNA: 3'- -GGCGGUggUGGCG---GGAG-CCaCGGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 188164 | 0.77 | 0.174321 |
Target: 5'- gCCGCUGCUGCCGCUCUCugaagcGUGCCGCg -3' miRNA: 3'- -GGCGGUGGUGGCGGGAGc-----CACGGCGg -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 54142 | 0.77 | 0.174321 |
Target: 5'- gCUGCUACCGCCGgCgUUGGagagGCCGCCg -3' miRNA: 3'- -GGCGGUGGUGGCgGgAGCCa---CGGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 137156 | 0.77 | 0.182479 |
Target: 5'- cCCGCCAUgGCCGCggCCgcagCGGccGCCGCCg -3' miRNA: 3'- -GGCGGUGgUGGCG--GGa---GCCa-CGGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 117611 | 0.77 | 0.186683 |
Target: 5'- aCCGCCGCCcCCGUCCUaccCGGcGCCGUa -3' miRNA: 3'- -GGCGGUGGuGGCGGGA---GCCaCGGCGg -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 55479 | 0.78 | 0.151768 |
Target: 5'- gCGCCGCCuuGCCGUCCUCcuGGUGCUccaGCCa -3' miRNA: 3'- gGCGGUGG--UGGCGGGAG--CCACGG---CGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 32902 | 0.79 | 0.148277 |
Target: 5'- gCCGCCGugcCCGCCGCCCccggcguaGGUGgCGCCg -3' miRNA: 3'- -GGCGGU---GGUGGCGGGag------CCACgGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 117191 | 0.79 | 0.135033 |
Target: 5'- gUCGCUGCCGCCGCCCgaggCGGUGgagaugucgcacCCGCUg -3' miRNA: 3'- -GGCGGUGGUGGCGGGa---GCCAC------------GGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 54049 | 0.84 | 0.064127 |
Target: 5'- gCCGCCACCACCGCcgCCUCcGccgaUGCCGCCg -3' miRNA: 3'- -GGCGGUGGUGGCG--GGAGcC----ACGGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 142349 | 0.83 | 0.074226 |
Target: 5'- gCCGCCACgGCCGCCg-CGGccGCCGCCg -3' miRNA: 3'- -GGCGGUGgUGGCGGgaGCCa-CGGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 126993 | 0.82 | 0.08359 |
Target: 5'- cCCGCUGCCGCUGCCCgacguggCGGUGCCcgacgacGCCg -3' miRNA: 3'- -GGCGGUGGUGGCGGGa------GCCACGG-------CGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 117266 | 0.82 | 0.090086 |
Target: 5'- cCCGCCACCGCCGUCgUCGGccgUGgUGCCg -3' miRNA: 3'- -GGCGGUGGUGGCGGgAGCC---ACgGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 233084 | 0.82 | 0.092281 |
Target: 5'- gCCGCCGCCuCCGCCgCUCGc-GCCGCCc -3' miRNA: 3'- -GGCGGUGGuGGCGG-GAGCcaCGGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 54175 | 0.81 | 0.099177 |
Target: 5'- uCCGCCACCGCCGCgCgacgUCGacuUGCCGCCa -3' miRNA: 3'- -GGCGGUGGUGGCGgG----AGCc--ACGGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 142199 | 0.81 | 0.109129 |
Target: 5'- aCCGCCGCCGCCGCUCUCGcccuccUCGCCa -3' miRNA: 3'- -GGCGGUGGUGGCGGGAGCcac---GGCGG- -5' |
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14493 | 3' | -64 | NC_003521.1 | + | 223822 | 0.8 | 0.127919 |
Target: 5'- gCCGCCGCCACCGCgggcgccugcugucCCUgCGGcUGCUGCUg -3' miRNA: 3'- -GGCGGUGGUGGCG--------------GGA-GCC-ACGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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