miRNA display CGI


Results 1 - 20 of 623 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 3' -64 NC_003521.1 + 132540 1.13 0.000634
Target:  5'- aCCGCCACCACCGCCCUCGGUGCCGCCg -3'
miRNA:   3'- -GGCGGUGGUGGCGGGAGCCACGGCGG- -5'
14493 3' -64 NC_003521.1 + 148958 0.88 0.033773
Target:  5'- aCCGCCGCCGCCGUCCU-GGUccGCCGCCc -3'
miRNA:   3'- -GGCGGUGGUGGCGGGAgCCA--CGGCGG- -5'
14493 3' -64 NC_003521.1 + 52938 0.88 0.036384
Target:  5'- cCCGCCGCCcguGCCGCCCgaggUGGUGaCCGCCa -3'
miRNA:   3'- -GGCGGUGG---UGGCGGGa---GCCAC-GGCGG- -5'
14493 3' -64 NC_003521.1 + 172294 0.86 0.050174
Target:  5'- gCCGCUGCCGCCGUCCggugUCGGUGgCGCCa -3'
miRNA:   3'- -GGCGGUGGUGGCGGG----AGCCACgGCGG- -5'
14493 3' -64 NC_003521.1 + 98030 0.85 0.051424
Target:  5'- uUGCCACCACCGCCgUUGGUggcaccgacgacGCCGCCg -3'
miRNA:   3'- gGCGGUGGUGGCGGgAGCCA------------CGGCGG- -5'
14493 3' -64 NC_003521.1 + 222087 0.85 0.056736
Target:  5'- gCGCCACCGCCGCCacgaUCGccGCCGCCa -3'
miRNA:   3'- gGCGGUGGUGGCGGg---AGCcaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 54049 0.84 0.064127
Target:  5'- gCCGCCACCACCGCcgCCUCcGccgaUGCCGCCg -3'
miRNA:   3'- -GGCGGUGGUGGCG--GGAGcC----ACGGCGG- -5'
14493 3' -64 NC_003521.1 + 105059 0.83 0.070701
Target:  5'- aCUGCCGCCACCGCCUUCGGUcCCGg- -3'
miRNA:   3'- -GGCGGUGGUGGCGGGAGCCAcGGCgg -5'
14493 3' -64 NC_003521.1 + 142349 0.83 0.074226
Target:  5'- gCCGCCACgGCCGCCg-CGGccGCCGCCg -3'
miRNA:   3'- -GGCGGUGgUGGCGGgaGCCa-CGGCGG- -5'
14493 3' -64 NC_003521.1 + 126993 0.82 0.08359
Target:  5'- cCCGCUGCCGCUGCCCgacguggCGGUGCCcgacgacGCCg -3'
miRNA:   3'- -GGCGGUGGUGGCGGGa------GCCACGG-------CGG- -5'
14493 3' -64 NC_003521.1 + 117266 0.82 0.090086
Target:  5'- cCCGCCACCGCCGUCgUCGGccgUGgUGCCg -3'
miRNA:   3'- -GGCGGUGGUGGCGGgAGCC---ACgGCGG- -5'
14493 3' -64 NC_003521.1 + 233084 0.82 0.092281
Target:  5'- gCCGCCGCCuCCGCCgCUCGc-GCCGCCc -3'
miRNA:   3'- -GGCGGUGGuGGCGG-GAGCcaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 27083 0.81 0.099177
Target:  5'- gCCGCCACCACgGCCUucugCGGcGCCGUCu -3'
miRNA:   3'- -GGCGGUGGUGgCGGGa---GCCaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 22122 0.81 0.099177
Target:  5'- gCCGCCGCCGucuccuCCGCCUUCGccGCCGCCc -3'
miRNA:   3'- -GGCGGUGGU------GGCGGGAGCcaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 54175 0.81 0.099177
Target:  5'- uCCGCCACCGCCGCgCgacgUCGacuUGCCGCCa -3'
miRNA:   3'- -GGCGGUGGUGGCGgG----AGCc--ACGGCGG- -5'
14493 3' -64 NC_003521.1 + 142199 0.81 0.109129
Target:  5'- aCCGCCGCCGCCGCUCUCGcccuccUCGCCa -3'
miRNA:   3'- -GGCGGUGGUGGCGGGAGCcac---GGCGG- -5'
14493 3' -64 NC_003521.1 + 148812 0.8 0.111228
Target:  5'- gCCGCCGCCGCCGCgCCUCGccgcucccgcuccGUucgcgccggaucgGCCGCCg -3'
miRNA:   3'- -GGCGGUGGUGGCG-GGAGC-------------CA-------------CGGCGG- -5'
14493 3' -64 NC_003521.1 + 223822 0.8 0.127919
Target:  5'- gCCGCCGCCACCGCgggcgccugcugucCCUgCGGcUGCUGCUg -3'
miRNA:   3'- -GGCGGUGGUGGCG--------------GGA-GCC-ACGGCGG- -5'
14493 3' -64 NC_003521.1 + 117191 0.79 0.135033
Target:  5'- gUCGCUGCCGCCGCCCgaggCGGUGgagaugucgcacCCGCUg -3'
miRNA:   3'- -GGCGGUGGUGGCGGGa---GCCAC------------GGCGG- -5'
14493 3' -64 NC_003521.1 + 204755 0.79 0.141513
Target:  5'- gCGCCGCCGCCGCCCUguuGUGUCGgCg -3'
miRNA:   3'- gGCGGUGGUGGCGGGAgc-CACGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.