miRNA display CGI


Results 1 - 20 of 623 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 3' -64 NC_003521.1 + 209 0.7 0.449658
Target:  5'- cCCGCCGCaCGCCGCCgCggaaacCGGUuCCGUg -3'
miRNA:   3'- -GGCGGUG-GUGGCGG-Ga-----GCCAcGGCGg -5'
14493 3' -64 NC_003521.1 + 781 0.66 0.684008
Target:  5'- gCGCCAUCggcggaggACCGCCCggCGcc-CCGCCg -3'
miRNA:   3'- gGCGGUGG--------UGGCGGGa-GCcacGGCGG- -5'
14493 3' -64 NC_003521.1 + 1147 0.69 0.554594
Target:  5'- aCCGCUGCCGuCCccgggaGCCa-CGGcGCCGCCu -3'
miRNA:   3'- -GGCGGUGGU-GG------CGGgaGCCaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 1375 0.66 0.729421
Target:  5'- -gGCCACCGCUguccccgaGCCCgCGcUGCUGCg -3'
miRNA:   3'- ggCGGUGGUGG--------CGGGaGCcACGGCGg -5'
14493 3' -64 NC_003521.1 + 1568 0.67 0.628411
Target:  5'- gCGCCACaC-CCGCCgUCGcUGCUgacgGCCg -3'
miRNA:   3'- gGCGGUG-GuGGCGGgAGCcACGG----CGG- -5'
14493 3' -64 NC_003521.1 + 2110 0.66 0.72045
Target:  5'- gCUGCCgguGCUACC-UCCUCuGGUcaacgucccacgGCCGCCg -3'
miRNA:   3'- -GGCGG---UGGUGGcGGGAG-CCA------------CGGCGG- -5'
14493 3' -64 NC_003521.1 + 2319 0.67 0.637706
Target:  5'- cCUGCUGCgCGCCGgCCUCcuGGgGCUGCUg -3'
miRNA:   3'- -GGCGGUG-GUGGCgGGAG--CCaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 2357 0.68 0.563718
Target:  5'- gCCGCgucucCGCC-CCGCCCgcCGaG-GCCGCCc -3'
miRNA:   3'- -GGCG-----GUGGuGGCGGGa-GC-CaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 2728 0.68 0.582079
Target:  5'- gCGCCGUCACCGCCUcgcUGGcugGCUGCUg -3'
miRNA:   3'- gGCGGUGGUGGCGGGa--GCCa--CGGCGG- -5'
14493 3' -64 NC_003521.1 + 3651 0.75 0.238792
Target:  5'- aCgGCCGCCGCCGUcugCCUCGGcgGCCGg- -3'
miRNA:   3'- -GgCGGUGGUGGCG---GGAGCCa-CGGCgg -5'
14493 3' -64 NC_003521.1 + 4345 0.78 0.162693
Target:  5'- gCGCCACCGCCGCCggCGGUucgcucaucGCgGCCc -3'
miRNA:   3'- gGCGGUGGUGGCGGgaGCCA---------CGgCGG- -5'
14493 3' -64 NC_003521.1 + 4647 0.69 0.536482
Target:  5'- cCUGCCACCccacccAUCGUCCgcuaGGUcCCGCCg -3'
miRNA:   3'- -GGCGGUGG------UGGCGGGag--CCAcGGCGG- -5'
14493 3' -64 NC_003521.1 + 5549 0.67 0.674792
Target:  5'- gCGCgGCCGCCGCCaUCGuuGUuCCGUCc -3'
miRNA:   3'- gGCGgUGGUGGCGGgAGC--CAcGGCGG- -5'
14493 3' -64 NC_003521.1 + 5837 0.66 0.681247
Target:  5'- aCCGCUACCGCUgggaccgcacguagGCCUcgUUGGUccgcaggcuggaGCCGUCg -3'
miRNA:   3'- -GGCGGUGGUGG--------------CGGG--AGCCA------------CGGCGG- -5'
14493 3' -64 NC_003521.1 + 6032 0.66 0.72045
Target:  5'- gUCGUCguACCACuCGCUCUCGG-GCgGUa -3'
miRNA:   3'- -GGCGG--UGGUG-GCGGGAGCCaCGgCGg -5'
14493 3' -64 NC_003521.1 + 6395 0.68 0.572882
Target:  5'- gCCGCaGCUACCGCgg-CGGcgacgggucuUGCCGCCu -3'
miRNA:   3'- -GGCGgUGGUGGCGggaGCC----------ACGGCGG- -5'
14493 3' -64 NC_003521.1 + 6677 0.67 0.656281
Target:  5'- cCCGCUcgugcugcaggGCCugCGCCCgCGaGcGCUGCUg -3'
miRNA:   3'- -GGCGG-----------UGGugGCGGGaGC-CaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 7194 0.73 0.308921
Target:  5'- gCGCCGCCGCUgaaauuGCCCUCGaGcaccCCGCCg -3'
miRNA:   3'- gGCGGUGGUGG------CGGGAGC-Cac--GGCGG- -5'
14493 3' -64 NC_003521.1 + 7658 0.68 0.572882
Target:  5'- gCCGCCACgGCgGCgCggacagCGGUGCCcaaGCa -3'
miRNA:   3'- -GGCGGUGgUGgCGgGa-----GCCACGG---CGg -5'
14493 3' -64 NC_003521.1 + 8442 0.72 0.389124
Target:  5'- -aGCCagcgcgagacgguggACCuCCGCUUcgCGGUGCCGCCg -3'
miRNA:   3'- ggCGG---------------UGGuGGCGGGa-GCCACGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.