miRNA display CGI


Results 1 - 20 of 623 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 3' -64 NC_003521.1 + 214784 0.77 0.199812
Target:  5'- cCCGCuCGCCGCCGUCCUCuucaCCGCCg -3'
miRNA:   3'- -GGCG-GUGGUGGCGGGAGccacGGCGG- -5'
14493 3' -64 NC_003521.1 + 155691 0.78 0.157874
Target:  5'- aUCGCCGCCgagggaggcuacguGCCGCCCgcCGcUGCCGCCg -3'
miRNA:   3'- -GGCGGUGG--------------UGGCGGGa-GCcACGGCGG- -5'
14493 3' -64 NC_003521.1 + 194789 0.78 0.158975
Target:  5'- gUCGCUGCCGCCaugugGCCCUucaCGGUGCUGCUg -3'
miRNA:   3'- -GGCGGUGGUGG-----CGGGA---GCCACGGCGG- -5'
14493 3' -64 NC_003521.1 + 4345 0.78 0.162693
Target:  5'- gCGCCACCGCCGCCggCGGUucgcucaucGCgGCCc -3'
miRNA:   3'- gGCGGUGGUGGCGGgaGCCA---------CGgCGG- -5'
14493 3' -64 NC_003521.1 + 171103 0.78 0.170365
Target:  5'- cCCGCCGuuACCGCguaCCUCaGG-GCCGCCg -3'
miRNA:   3'- -GGCGGUggUGGCG---GGAG-CCaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 188164 0.77 0.174321
Target:  5'- gCCGCUGCUGCCGCUCUCugaagcGUGCCGCg -3'
miRNA:   3'- -GGCGGUGGUGGCGGGAGc-----CACGGCGg -5'
14493 3' -64 NC_003521.1 + 54142 0.77 0.174321
Target:  5'- gCUGCUACCGCCGgCgUUGGagagGCCGCCg -3'
miRNA:   3'- -GGCGGUGGUGGCgGgAGCCa---CGGCGG- -5'
14493 3' -64 NC_003521.1 + 137156 0.77 0.182479
Target:  5'- cCCGCCAUgGCCGCggCCgcagCGGccGCCGCCg -3'
miRNA:   3'- -GGCGGUGgUGGCG--GGa---GCCa-CGGCGG- -5'
14493 3' -64 NC_003521.1 + 117611 0.77 0.186683
Target:  5'- aCCGCCGCCcCCGUCCUaccCGGcGCCGUa -3'
miRNA:   3'- -GGCGGUGGuGGCGGGA---GCCaCGGCGg -5'
14493 3' -64 NC_003521.1 + 55479 0.78 0.151768
Target:  5'- gCGCCGCCuuGCCGUCCUCcuGGUGCUccaGCCa -3'
miRNA:   3'- gGCGGUGG--UGGCGGGAG--CCACGG---CGG- -5'
14493 3' -64 NC_003521.1 + 32902 0.79 0.148277
Target:  5'- gCCGCCGugcCCGCCGCCCccggcguaGGUGgCGCCg -3'
miRNA:   3'- -GGCGGU---GGUGGCGGGag------CCACgGCGG- -5'
14493 3' -64 NC_003521.1 + 117191 0.79 0.135033
Target:  5'- gUCGCUGCCGCCGCCCgaggCGGUGgagaugucgcacCCGCUg -3'
miRNA:   3'- -GGCGGUGGUGGCGGGa---GCCAC------------GGCGG- -5'
14493 3' -64 NC_003521.1 + 54049 0.84 0.064127
Target:  5'- gCCGCCACCACCGCcgCCUCcGccgaUGCCGCCg -3'
miRNA:   3'- -GGCGGUGGUGGCG--GGAGcC----ACGGCGG- -5'
14493 3' -64 NC_003521.1 + 142349 0.83 0.074226
Target:  5'- gCCGCCACgGCCGCCg-CGGccGCCGCCg -3'
miRNA:   3'- -GGCGGUGgUGGCGGgaGCCa-CGGCGG- -5'
14493 3' -64 NC_003521.1 + 126993 0.82 0.08359
Target:  5'- cCCGCUGCCGCUGCCCgacguggCGGUGCCcgacgacGCCg -3'
miRNA:   3'- -GGCGGUGGUGGCGGGa------GCCACGG-------CGG- -5'
14493 3' -64 NC_003521.1 + 117266 0.82 0.090086
Target:  5'- cCCGCCACCGCCGUCgUCGGccgUGgUGCCg -3'
miRNA:   3'- -GGCGGUGGUGGCGGgAGCC---ACgGCGG- -5'
14493 3' -64 NC_003521.1 + 233084 0.82 0.092281
Target:  5'- gCCGCCGCCuCCGCCgCUCGc-GCCGCCc -3'
miRNA:   3'- -GGCGGUGGuGGCGG-GAGCcaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 54175 0.81 0.099177
Target:  5'- uCCGCCACCGCCGCgCgacgUCGacuUGCCGCCa -3'
miRNA:   3'- -GGCGGUGGUGGCGgG----AGCc--ACGGCGG- -5'
14493 3' -64 NC_003521.1 + 142199 0.81 0.109129
Target:  5'- aCCGCCGCCGCCGCUCUCGcccuccUCGCCa -3'
miRNA:   3'- -GGCGGUGGUGGCGGGAGCcac---GGCGG- -5'
14493 3' -64 NC_003521.1 + 223822 0.8 0.127919
Target:  5'- gCCGCCGCCACCGCgggcgccugcugucCCUgCGGcUGCUGCUg -3'
miRNA:   3'- -GGCGGUGGUGGCG--------------GGA-GCC-ACGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.