miRNA display CGI


Results 1 - 20 of 623 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 3' -64 NC_003521.1 + 223331 0.66 0.696849
Target:  5'- gCGCUGCCGCagauaggugccccaGgCCUCGGcgGCgGCCu -3'
miRNA:   3'- gGCGGUGGUGg-------------CgGGAGCCa-CGgCGG- -5'
14493 3' -64 NC_003521.1 + 77431 0.66 0.711416
Target:  5'- -gGCCACggccgagaggaUGCCGCCgUUGGUGcCCGUg -3'
miRNA:   3'- ggCGGUG-----------GUGGCGGgAGCCAC-GGCGg -5'
14493 3' -64 NC_003521.1 + 156072 0.66 0.684928
Target:  5'- gUCGCCGCCGCCGCgCCcgagcaagacgacgaCGGcagUGcCCGCg -3'
miRNA:   3'- -GGCGGUGGUGGCG-GGa--------------GCC---AC-GGCGg -5'
14493 3' -64 NC_003521.1 + 72687 0.66 0.693188
Target:  5'- uCCGCCccguCCACCcacggcgcugucGUCCUCGGcGauccaCGCCu -3'
miRNA:   3'- -GGCGGu---GGUGG------------CGGGAGCCaCg----GCGG- -5'
14493 3' -64 NC_003521.1 + 101036 0.66 0.69959
Target:  5'- aCGCCcgugcagcuccaugGCgGCCGCCgaCGGccggauccUGCCGUCg -3'
miRNA:   3'- gGCGG--------------UGgUGGCGGgaGCC--------ACGGCGG- -5'
14493 3' -64 NC_003521.1 + 79095 0.66 0.692272
Target:  5'- aCGCUggcgaugACCuCgCGCaaccgCUCGGUGUCGCCg -3'
miRNA:   3'- gGCGG-------UGGuG-GCGg----GAGCCACGGCGG- -5'
14493 3' -64 NC_003521.1 + 57819 0.66 0.684008
Target:  5'- cCCaGCUGCCGCaugaaGCUCggcCGGUGaCGCCg -3'
miRNA:   3'- -GG-CGGUGGUGg----CGGGa--GCCACgGCGG- -5'
14493 3' -64 NC_003521.1 + 225507 0.66 0.702326
Target:  5'- gCGCUgAUCACC-CgCUCGGcGCCGUCg -3'
miRNA:   3'- gGCGG-UGGUGGcGgGAGCCaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 78479 0.66 0.693188
Target:  5'- gCUGCgCGCC-CaCGCCCgCaGUcGCCGCCu -3'
miRNA:   3'- -GGCG-GUGGuG-GCGGGaGcCA-CGGCGG- -5'
14493 3' -64 NC_003521.1 + 39435 0.66 0.684008
Target:  5'- aUGCCGCUGCCGgCCgagccCGGcGCCgaggGCCg -3'
miRNA:   3'- gGCGGUGGUGGCgGGa----GCCaCGG----CGG- -5'
14493 3' -64 NC_003521.1 + 217624 0.66 0.684008
Target:  5'- uCgGCCGCCAUC-UCCUCGGcGUgGUCg -3'
miRNA:   3'- -GgCGGUGGUGGcGGGAGCCaCGgCGG- -5'
14493 3' -64 NC_003521.1 + 57964 0.66 0.684008
Target:  5'- cUCGCuauCAUCAUCGUCCUCGcugcuguugucaGcGCCGCCg -3'
miRNA:   3'- -GGCG---GUGGUGGCGGGAGC------------CaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 112793 0.66 0.702326
Target:  5'- gCCGCCuacgGgCACgCGCUCUgGGacgGCCGCg -3'
miRNA:   3'- -GGCGG----UgGUG-GCGGGAgCCa--CGGCGg -5'
14493 3' -64 NC_003521.1 + 42945 0.66 0.693188
Target:  5'- uCCGCUGCCGCCugcaGCCCagcgagCGcGacCCGCCg -3'
miRNA:   3'- -GGCGGUGGUGG----CGGGa-----GC-CacGGCGG- -5'
14493 3' -64 NC_003521.1 + 123352 0.66 0.702326
Target:  5'- gCGCCGCgGCCGUggCCUCcGacaGCCGCa -3'
miRNA:   3'- gGCGGUGgUGGCG--GGAGcCa--CGGCGg -5'
14493 3' -64 NC_003521.1 + 28601 0.66 0.693188
Target:  5'- gCGCgACCucacCCGCUacgUGGUGCUGCa -3'
miRNA:   3'- gGCGgUGGu---GGCGGga-GCCACGGCGg -5'
14493 3' -64 NC_003521.1 + 166589 0.66 0.702326
Target:  5'- cCCGUCGuCCACCGUCa-CGGcGCCGaCg -3'
miRNA:   3'- -GGCGGU-GGUGGCGGgaGCCaCGGCgG- -5'
14493 3' -64 NC_003521.1 + 225161 0.66 0.693188
Target:  5'- gUCGCgCACCACCucgGCgCU--GUGCUGCCg -3'
miRNA:   3'- -GGCG-GUGGUGG---CGgGAgcCACGGCGG- -5'
14493 3' -64 NC_003521.1 + 160308 0.66 0.705968
Target:  5'- gUCGCUGCCGCCuCCC-CGGggucaucguugugguUGUCGUCg -3'
miRNA:   3'- -GGCGGUGGUGGcGGGaGCC---------------ACGGCGG- -5'
14493 3' -64 NC_003521.1 + 201008 0.66 0.684008
Target:  5'- gCGCCAUCggcggaggACCGCCCggCGcc-CCGCCg -3'
miRNA:   3'- gGCGGUGG--------UGGCGGGa-GCcacGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.