miRNA display CGI


Results 1 - 20 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14494 3' -56.6 NC_003521.1 + 164350 0.66 0.92439
Target:  5'- ---cCGGCGACAGCU-CCUacCGCCACa -3'
miRNA:   3'- caauGUCGUUGUCGGcGGGa-GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 70149 0.66 0.923855
Target:  5'- -cUGCGGCGagcGCGGCUGCCUaucacgaguccacUCGUUGCg -3'
miRNA:   3'- caAUGUCGU---UGUCGGCGGG-------------AGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 126759 0.66 0.913262
Target:  5'- -cUGCAGCGACgugaaguccGGCagGCCCUggCGCUGCg -3'
miRNA:   3'- caAUGUCGUUG---------UCGg-CGGGA--GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 196058 0.66 0.92439
Target:  5'- ---cCAGCAcCGGCCGCCUUcCGCgGu -3'
miRNA:   3'- caauGUCGUuGUCGGCGGGA-GCGgUg -5'
14494 3' -56.6 NC_003521.1 + 102118 0.66 0.913262
Target:  5'- -gUGCAGCGGCAGUagaggggcgaguUGUUCUUGUCACc -3'
miRNA:   3'- caAUGUCGUUGUCG------------GCGGGAGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 60708 0.66 0.92439
Target:  5'- gGggGCGGCGcgGGUCGCaCCaCGCCGCu -3'
miRNA:   3'- -CaaUGUCGUugUCGGCG-GGaGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 40559 0.66 0.913262
Target:  5'- --cGCAGCucGCGGUaguaGCCCa-GCCACa -3'
miRNA:   3'- caaUGUCGu-UGUCGg---CGGGagCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 5523 0.66 0.92439
Target:  5'- --aGCAGCAgcgacggugacgGCAGCCGgCgCggcCGCCGCc -3'
miRNA:   3'- caaUGUCGU------------UGUCGGCgG-Ga--GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 203723 0.66 0.913262
Target:  5'- --gGCAGCAGCAGCCGgggcgacaCUgUCG-CACg -3'
miRNA:   3'- caaUGUCGUUGUCGGC--------GGgAGCgGUG- -5'
14494 3' -56.6 NC_003521.1 + 110527 0.66 0.939354
Target:  5'- -aUGC-GCGGC-GCCGCggCCUCGCC-Ca -3'
miRNA:   3'- caAUGuCGUUGuCGGCG--GGAGCGGuG- -5'
14494 3' -56.6 NC_003521.1 + 124395 0.66 0.9206
Target:  5'- --cGCAGCAugacaaacagggccgACAGCCGCgagaucuCCUCGUCcgGCg -3'
miRNA:   3'- caaUGUCGU---------------UGUCGGCG-------GGAGCGG--UG- -5'
14494 3' -56.6 NC_003521.1 + 54280 0.66 0.92439
Target:  5'- --cACGGCGAagaGGCCGUUgcggCUgGCCACg -3'
miRNA:   3'- caaUGUCGUUg--UCGGCGG----GAgCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 136064 0.66 0.918941
Target:  5'- --gGCAGCGGCuGCgCGCUCaUCuCCACg -3'
miRNA:   3'- caaUGUCGUUGuCG-GCGGG-AGcGGUG- -5'
14494 3' -56.6 NC_003521.1 + 75765 0.66 0.92439
Target:  5'- -gUAgGGCAGaaaGGCCGCCUccaggugcagaCGCCGCg -3'
miRNA:   3'- caAUgUCGUUg--UCGGCGGGa----------GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 123098 0.66 0.918941
Target:  5'- --cACGcGCAccucCAGaCCGUCCUCGCCGg -3'
miRNA:   3'- caaUGU-CGUu---GUC-GGCGGGAGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 216983 0.66 0.92439
Target:  5'- --cACAGCGccaGCAgGUCGgCCUCccGCCACg -3'
miRNA:   3'- caaUGUCGU---UGU-CGGCgGGAG--CGGUG- -5'
14494 3' -56.6 NC_003521.1 + 120975 0.66 0.913262
Target:  5'- uUUGCGGUccgcCAGCuCGUCCUCGUCGg -3'
miRNA:   3'- cAAUGUCGuu--GUCG-GCGGGAGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 153428 0.66 0.913262
Target:  5'- cGUgguCAGCAGCAGCCGgUCgCGCUc- -3'
miRNA:   3'- -CAau-GUCGUUGUCGGCgGGaGCGGug -5'
14494 3' -56.6 NC_003521.1 + 115392 0.66 0.91384
Target:  5'- -gUGCAGgGcgcggGCGGCCGCCaCggccuccggacucagCGCCGCg -3'
miRNA:   3'- caAUGUCgU-----UGUCGGCGG-Ga--------------GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 153596 0.66 0.92439
Target:  5'- -cUGCAGCAGCAG-CGCCagguuggCGCUcaGCa -3'
miRNA:   3'- caAUGUCGUUGUCgGCGGga-----GCGG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.