miRNA display CGI


Results 1 - 20 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14494 3' -56.6 NC_003521.1 + 1129 0.67 0.892912
Target:  5'- --gGCGGCGACGggacacgaaccgcuGCCGUCCccgggaGCCACg -3'
miRNA:   3'- caaUGUCGUUGU--------------CGGCGGGag----CGGUG- -5'
14494 3' -56.6 NC_003521.1 + 1259 0.68 0.844395
Target:  5'- -cUGCAGCGcaACacgcugacccuAGCCGCCCgcgaCGCCGa -3'
miRNA:   3'- caAUGUCGU--UG-----------UCGGCGGGa---GCGGUg -5'
14494 3' -56.6 NC_003521.1 + 1584 0.68 0.874475
Target:  5'- --cGCuGCuGACGGCCGUgCagCGCCACa -3'
miRNA:   3'- caaUGuCG-UUGUCGGCGgGa-GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 2231 0.68 0.836394
Target:  5'- -gUACGG--ACAGUCGCCgUCGuCCGCg -3'
miRNA:   3'- caAUGUCguUGUCGGCGGgAGC-GGUG- -5'
14494 3' -56.6 NC_003521.1 + 3665 0.66 0.934596
Target:  5'- -cUGCcuCGGCGGCCGggaCCCUCGUCGg -3'
miRNA:   3'- caAUGucGUUGUCGGC---GGGAGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 5313 0.68 0.867255
Target:  5'- --cGCGGgGGCGGCgUGCCC-CGCCGg -3'
miRNA:   3'- caaUGUCgUUGUCG-GCGGGaGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 5523 0.66 0.92439
Target:  5'- --aGCAGCAgcgacggugacgGCAGCCGgCgCggcCGCCGCc -3'
miRNA:   3'- caaUGUCGU------------UGUCGGCgG-Ga--GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 6729 0.67 0.901221
Target:  5'- -gUGCAGgGccugacGCAGCCaGCgCUCGCCGa -3'
miRNA:   3'- caAUGUCgU------UGUCGG-CGgGAGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 7094 0.69 0.828215
Target:  5'- --cGCGGCGGCGG-CGUCCUCcuucuccagGCCGCu -3'
miRNA:   3'- caaUGUCGUUGUCgGCGGGAG---------CGGUG- -5'
14494 3' -56.6 NC_003521.1 + 7645 0.67 0.894863
Target:  5'- --gACGGUAacgGCGGCCGCCacggCGgCGCg -3'
miRNA:   3'- caaUGUCGU---UGUCGGCGGga--GCgGUG- -5'
14494 3' -56.6 NC_003521.1 + 7756 0.67 0.894863
Target:  5'- --gGCGGCGGCAGUC-CCagcagaCGCCGCa -3'
miRNA:   3'- caaUGUCGUUGUCGGcGGga----GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 13944 0.72 0.649451
Target:  5'- -gUGguGCccccGCAGCUGCCCUCGCUg- -3'
miRNA:   3'- caAUguCGu---UGUCGGCGGGAGCGGug -5'
14494 3' -56.6 NC_003521.1 + 14457 0.76 0.437138
Target:  5'- --gGCGGCGuCAGCCGCCgCUC-CCGCg -3'
miRNA:   3'- caaUGUCGUuGUCGGCGG-GAGcGGUG- -5'
14494 3' -56.6 NC_003521.1 + 14760 0.66 0.934596
Target:  5'- --cGCGGCcGgGGCgCGCCUUCGUgGCc -3'
miRNA:   3'- caaUGUCGuUgUCG-GCGGGAGCGgUG- -5'
14494 3' -56.6 NC_003521.1 + 15759 0.67 0.881486
Target:  5'- ----gGGCAGCAGCaUGCCCgaGCUACg -3'
miRNA:   3'- caaugUCGUUGUCG-GCGGGagCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 15895 0.67 0.900595
Target:  5'- --gGCGGCAGCAcgcGCCuguacaucuacgaGCCCUCGCa-- -3'
miRNA:   3'- caaUGUCGUUGU---CGG-------------CGGGAGCGgug -5'
14494 3' -56.6 NC_003521.1 + 16010 0.74 0.510859
Target:  5'- ---cCAGCcGCAGaCGCCCUaCGCCACg -3'
miRNA:   3'- caauGUCGuUGUCgGCGGGA-GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 16792 0.66 0.939354
Target:  5'- --aGgGGCGACGGCgccCGCCC-CGaCCGCc -3'
miRNA:   3'- caaUgUCGUUGUCG---GCGGGaGC-GGUG- -5'
14494 3' -56.6 NC_003521.1 + 16980 0.71 0.703255
Target:  5'- --cGCAGCAGCAGCCGCagggacagcaggCGcCCGCg -3'
miRNA:   3'- caaUGUCGUUGUCGGCGgga---------GC-GGUG- -5'
14494 3' -56.6 NC_003521.1 + 18477 0.67 0.880794
Target:  5'- --cGCGGCGagugucgccuggaGgAGCUGCCCgugUGCCACc -3'
miRNA:   3'- caaUGUCGU-------------UgUCGGCGGGa--GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.