Results 1 - 20 of 426 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14494 | 3' | -56.6 | NC_003521.1 | + | 148823 | 0.74 | 0.520451 |
Target: 5'- --cGCGGCGACcGCCuGCCCUCgGCCGa -3' miRNA: 3'- caaUGUCGUUGuCGG-CGGGAG-CGGUg -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 186590 | 0.75 | 0.473278 |
Target: 5'- --aACGGUAGCAGCCGCCCggcagUCGgUACu -3' miRNA: 3'- caaUGUCGUUGUCGGCGGG-----AGCgGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 225761 | 0.75 | 0.473278 |
Target: 5'- uGUUGCAGC-ACGcGCCGCUCgcgcucgCGCCGCu -3' miRNA: 3'- -CAAUGUCGuUGU-CGGCGGGa------GCGGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 96763 | 0.75 | 0.482547 |
Target: 5'- --aACAGagAACGGUCGCCgUCGCCGCc -3' miRNA: 3'- caaUGUCg-UUGUCGGCGGgAGCGGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 198262 | 0.75 | 0.482547 |
Target: 5'- --cGCAGCGAUAGCCGUCCcagCGgCACc -3' miRNA: 3'- caaUGUCGUUGUCGGCGGGa--GCgGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 164451 | 0.75 | 0.482547 |
Target: 5'- --cGCGGCcGCGGCCGUCacggUCGCCGCu -3' miRNA: 3'- caaUGUCGuUGUCGGCGGg---AGCGGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 111168 | 0.75 | 0.501342 |
Target: 5'- --cAUAGC-GCGGCCGCCCcggcgacggCGCCGCg -3' miRNA: 3'- caaUGUCGuUGUCGGCGGGa--------GCGGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 143554 | 0.74 | 0.510859 |
Target: 5'- --gACgAGCAGCAGCCGCCaUCGCUg- -3' miRNA: 3'- caaUG-UCGUUGUCGGCGGgAGCGGug -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 65715 | 0.74 | 0.520451 |
Target: 5'- --aGCGGCGccGCGGCgGCCCUgGCCGg -3' miRNA: 3'- caaUGUCGU--UGUCGgCGGGAgCGGUg -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 191145 | 0.76 | 0.446026 |
Target: 5'- --gACGGCGACAgcGCCGCgCUCGCC-Cg -3' miRNA: 3'- caaUGUCGUUGU--CGGCGgGAGCGGuG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 187392 | 0.76 | 0.419672 |
Target: 5'- --aGCGGCAACAGCCuccGCaCCUUGCCGa -3' miRNA: 3'- caaUGUCGUUGUCGG---CG-GGAGCGGUg -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 40610 | 0.76 | 0.419672 |
Target: 5'- -gUGCGccGguGCAGCCGCuUCUCGCCGCa -3' miRNA: 3'- caAUGU--CguUGUCGGCG-GGAGCGGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 53161 | 0.86 | 0.117036 |
Target: 5'- --aACAGUAcacGCGGCCGCCCUCGCCGa -3' miRNA: 3'- caaUGUCGU---UGUCGGCGGGAGCGGUg -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 146901 | 0.81 | 0.23468 |
Target: 5'- --gGCAGCggUAGUCGCCgCUUGCCGCg -3' miRNA: 3'- caaUGUCGuuGUCGGCGG-GAGCGGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 122108 | 0.78 | 0.331637 |
Target: 5'- -gUGCGGCuGCAGCgGCgUCUCGCCGCg -3' miRNA: 3'- caAUGUCGuUGUCGgCG-GGAGCGGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 61229 | 0.77 | 0.369912 |
Target: 5'- --aGCAGCAGCGGCaGCCUgcagaacuucauUCGCCACa -3' miRNA: 3'- caaUGUCGUUGUCGgCGGG------------AGCGGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 63547 | 0.77 | 0.37792 |
Target: 5'- ---cCAGCGucacGgAGCCGCCCUCGUCACc -3' miRNA: 3'- caauGUCGU----UgUCGGCGGGAGCGGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 127542 | 0.77 | 0.386045 |
Target: 5'- -gUGCGGCGGCAGCaCGCCgUCgGCCAg -3' miRNA: 3'- caAUGUCGUUGUCG-GCGGgAG-CGGUg -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 234293 | 0.77 | 0.402636 |
Target: 5'- -cUGgGGCGggacGCAGaCCGCCCUCGUCACc -3' miRNA: 3'- caAUgUCGU----UGUC-GGCGGGAGCGGUG- -5' |
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14494 | 3' | -56.6 | NC_003521.1 | + | 116768 | 0.76 | 0.411099 |
Target: 5'- -gUGCAGCGugGGCCGCCgC-CGCgGCa -3' miRNA: 3'- caAUGUCGUugUCGGCGG-GaGCGgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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