miRNA display CGI


Results 1 - 20 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14494 3' -56.6 NC_003521.1 + 133100 1.1 0.00311
Target:  5'- gGUUACAGCAACAGCCGCCCUCGCCACa -3'
miRNA:   3'- -CAAUGUCGUUGUCGGCGGGAGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 91056 0.87 0.097698
Target:  5'- cGUUGaGGCGuaccgcGCGGCCGCCCUCGCCGCa -3'
miRNA:   3'- -CAAUgUCGU------UGUCGGCGGGAGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 53161 0.86 0.117036
Target:  5'- --aACAGUAcacGCGGCCGCCCUCGCCGa -3'
miRNA:   3'- caaUGUCGU---UGUCGGCGGGAGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 130220 0.83 0.17098
Target:  5'- -gUACAGauGCAGCCGCCCUCGCC-Ca -3'
miRNA:   3'- caAUGUCguUGUCGGCGGGAGCGGuG- -5'
14494 3' -56.6 NC_003521.1 + 74376 0.83 0.184151
Target:  5'- -gUGCGGCGACGGCuCGCCCUCGaucuaCACg -3'
miRNA:   3'- caAUGUCGUUGUCG-GCGGGAGCg----GUG- -5'
14494 3' -56.6 NC_003521.1 + 146901 0.81 0.23468
Target:  5'- --gGCAGCggUAGUCGCCgCUUGCCGCg -3'
miRNA:   3'- caaUGUCGuuGUCGGCGG-GAGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 47670 0.81 0.240328
Target:  5'- --aGCAGCAGCAGaCGCCCcCGCCAUg -3'
miRNA:   3'- caaUGUCGUUGUCgGCGGGaGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 90156 0.8 0.275984
Target:  5'- --aGCAGCGGCgccgccgccggagAGCCGCCUUCGUCGCg -3'
miRNA:   3'- caaUGUCGUUG-------------UCGGCGGGAGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 122108 0.78 0.331637
Target:  5'- -gUGCGGCuGCAGCgGCgUCUCGCCGCg -3'
miRNA:   3'- caAUGUCGuUGUCGgCG-GGAGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 124461 0.78 0.354246
Target:  5'- --gGCAGCAGCAGCuCGgCCUCGUCGg -3'
miRNA:   3'- caaUGUCGUUGUCG-GCgGGAGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 61229 0.77 0.369912
Target:  5'- --aGCAGCAGCGGCaGCCUgcagaacuucauUCGCCACa -3'
miRNA:   3'- caaUGUCGUUGUCGgCGGG------------AGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 63547 0.77 0.37792
Target:  5'- ---cCAGCGucacGgAGCCGCCCUCGUCACc -3'
miRNA:   3'- caauGUCGU----UgUCGGCGGGAGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 127542 0.77 0.386045
Target:  5'- -gUGCGGCGGCAGCaCGCCgUCgGCCAg -3'
miRNA:   3'- caAUGUCGUUGUCG-GCGGgAG-CGGUg -5'
14494 3' -56.6 NC_003521.1 + 234293 0.77 0.402636
Target:  5'- -cUGgGGCGggacGCAGaCCGCCCUCGUCACc -3'
miRNA:   3'- caAUgUCGU----UGUC-GGCGGGAGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 182791 0.77 0.402636
Target:  5'- --aGCAGCAACAcgcGCgCGCCCUCGUCGu -3'
miRNA:   3'- caaUGUCGUUGU---CG-GCGGGAGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 116768 0.76 0.411099
Target:  5'- -gUGCAGCGugGGCCGCCgC-CGCgGCa -3'
miRNA:   3'- caAUGUCGUugUCGGCGG-GaGCGgUG- -5'
14494 3' -56.6 NC_003521.1 + 198063 0.76 0.41881
Target:  5'- -cUugAGCAGCAGCUuuuucuuGCCCUCGgCGCg -3'
miRNA:   3'- caAugUCGUUGUCGG-------CGGGAGCgGUG- -5'
14494 3' -56.6 NC_003521.1 + 40610 0.76 0.419672
Target:  5'- -gUGCGccGguGCAGCCGCuUCUCGCCGCa -3'
miRNA:   3'- caAUGU--CguUGUCGGCG-GGAGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 187392 0.76 0.419672
Target:  5'- --aGCGGCAACAGCCuccGCaCCUUGCCGa -3'
miRNA:   3'- caaUGUCGUUGUCGG---CG-GGAGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 161185 0.76 0.437138
Target:  5'- -cUGCAGCAGCAGacgaCGCCgaggCGCCGCg -3'
miRNA:   3'- caAUGUCGUUGUCg---GCGGga--GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.