miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14494 5' -55 NC_003521.1 + 77042 0.65 0.972449
Target:  5'- gCGGUGGUGGCGccgcUACCGuuguUGCCGCCGc -3'
miRNA:   3'- -GUCACCGUCGUc---AUGGUc---AUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 217337 0.65 0.972449
Target:  5'- aCGGUGGCGGaCGGcgGCCGGUccucguACUugCu -3'
miRNA:   3'- -GUCACCGUC-GUCa-UGGUCA------UGGugGu -5'
14494 5' -55 NC_003521.1 + 98316 0.65 0.972449
Target:  5'- aAGUGGUGGCGGcgGCCAcgacggugGUugCGCUg -3'
miRNA:   3'- gUCACCGUCGUCa-UGGU--------CAugGUGGu -5'
14494 5' -55 NC_003521.1 + 186402 0.65 0.972449
Target:  5'- gCGGcGGCAGCAGUGCagguagaucaGGUAgCACaCGa -3'
miRNA:   3'- -GUCaCCGUCGUCAUGg---------UCAUgGUG-GU- -5'
14494 5' -55 NC_003521.1 + 114511 0.65 0.972449
Target:  5'- -cGUGGCcGCcGUGCCcaccGCCGCCAc -3'
miRNA:   3'- guCACCGuCGuCAUGGuca-UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 120752 0.65 0.972449
Target:  5'- aGGUGGCcGCcuGGaUGCCGGccUGCCACUg -3'
miRNA:   3'- gUCACCGuCG--UC-AUGGUC--AUGGUGGu -5'
14494 5' -55 NC_003521.1 + 120959 0.66 0.966597
Target:  5'- gCAGggGGCggGGCGGuUugCGGU-CCGCCAg -3'
miRNA:   3'- -GUCa-CCG--UCGUC-AugGUCAuGGUGGU- -5'
14494 5' -55 NC_003521.1 + 127327 0.66 0.959919
Target:  5'- --uUGGuCAGCGGcUGCCGGUcgGCCACg- -3'
miRNA:   3'- gucACC-GUCGUC-AUGGUCA--UGGUGgu -5'
14494 5' -55 NC_003521.1 + 238293 0.66 0.959919
Target:  5'- --uUGGCGGCgAGgGCCAGUACC-UCGg -3'
miRNA:   3'- gucACCGUCG-UCaUGGUCAUGGuGGU- -5'
14494 5' -55 NC_003521.1 + 31706 0.66 0.963029
Target:  5'- gCGGcGGCAGCAugugcgcGUGCUGGgacgccgcgGCCACCGc -3'
miRNA:   3'- -GUCaCCGUCGU-------CAUGGUCa--------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 178867 0.66 0.963364
Target:  5'- uCAGcgGGCAGUAGaGCgAG-GCCGCCu -3'
miRNA:   3'- -GUCa-CCGUCGUCaUGgUCaUGGUGGu -5'
14494 5' -55 NC_003521.1 + 97499 0.66 0.966597
Target:  5'- uCGGUGGCGGCuGUcucuACCGcggGCgACCAc -3'
miRNA:   3'- -GUCACCGUCGuCA----UGGUca-UGgUGGU- -5'
14494 5' -55 NC_003521.1 + 230481 0.66 0.957748
Target:  5'- -uGUGG-AGCAGUACCucuagguuuuuaggaGGUGCUAUCGa -3'
miRNA:   3'- guCACCgUCGUCAUGG---------------UCAUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 88069 0.66 0.956257
Target:  5'- gCGGUGGuCGGCGGcGCCcGUgACCACgGg -3'
miRNA:   3'- -GUCACC-GUCGUCaUGGuCA-UGGUGgU- -5'
14494 5' -55 NC_003521.1 + 76719 0.66 0.956257
Target:  5'- cCGGcGGCGGCAGUaaagacuaaggaAUgAGUccuGCCACCGa -3'
miRNA:   3'- -GUCaCCGUCGUCA------------UGgUCA---UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 91858 0.66 0.955115
Target:  5'- cCAG-GGCGGCGG-ACCaggacggcggcggcGGUGCgACCAc -3'
miRNA:   3'- -GUCaCCGUCGUCaUGG--------------UCAUGgUGGU- -5'
14494 5' -55 NC_003521.1 + 188402 0.66 0.969623
Target:  5'- gCAGUGGaCAGCGucGUGCUAcucGUACUGCUg -3'
miRNA:   3'- -GUCACC-GUCGU--CAUGGU---CAUGGUGGu -5'
14494 5' -55 NC_003521.1 + 188130 0.66 0.967832
Target:  5'- uGGUGG-AGCGGcUggcaccgccgacgcuGCCGGUGCCGCUg -3'
miRNA:   3'- gUCACCgUCGUC-A---------------UGGUCAUGGUGGu -5'
14494 5' -55 NC_003521.1 + 36075 0.66 0.969623
Target:  5'- aCAGggcGGCGGCGGcGCCuccAUCACCAc -3'
miRNA:   3'- -GUCa--CCGUCGUCaUGGucaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 124788 0.66 0.970777
Target:  5'- cCAGUGGCaccgggaugacccagGGCAGcACCAGcucCCACUu -3'
miRNA:   3'- -GUCACCG---------------UCGUCaUGGUCau-GGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.