miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14494 5' -55 NC_003521.1 + 133134 1.08 0.00583
Target:  5'- gCAGUGGCAGCAGUACCAGUACCACCAc -3'
miRNA:   3'- -GUCACCGUCGUCAUGGUCAUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 141965 0.79 0.381529
Target:  5'- gCGGcGGUAGCAGUACCAacACCACCAu -3'
miRNA:   3'- -GUCaCCGUCGUCAUGGUcaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 110686 0.78 0.415207
Target:  5'- uCGGUGGCGGCAGcGgCGGcGCCGCCGa -3'
miRNA:   3'- -GUCACCGUCGUCaUgGUCaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 134698 0.75 0.545726
Target:  5'- uGGUGGCGGUAgGUGCCcacgGCCGCCAc -3'
miRNA:   3'- gUCACCGUCGU-CAUGGuca-UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 164087 0.75 0.554638
Target:  5'- uCGGUGGCAGgacucauuccuUAGUcuuuacugccgccGCCGGUGCCACCGc -3'
miRNA:   3'- -GUCACCGUC-----------GUCA-------------UGGUCAUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 123580 0.75 0.57559
Target:  5'- gGGaUGGCGGCGGcGCCGGgaGCCGCCGc -3'
miRNA:   3'- gUC-ACCGUCGUCaUGGUCa-UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 130975 0.74 0.656452
Target:  5'- gCGGUGGgGGCAGUGagcaCGGUACCcaGCCu -3'
miRNA:   3'- -GUCACCgUCGUCAUg---GUCAUGG--UGGu -5'
14494 5' -55 NC_003521.1 + 19123 0.73 0.672605
Target:  5'- gGGUGGCGggccgccGguGUACCAGUcggagugccucccgACCACCGa -3'
miRNA:   3'- gUCACCGU-------CguCAUGGUCA--------------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 54216 0.73 0.686672
Target:  5'- cCGGUGGUccGGCAGUACCG--ACUGCCGg -3'
miRNA:   3'- -GUCACCG--UCGUCAUGGUcaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 218330 0.73 0.706611
Target:  5'- -cGUGGCcacGGUGGUGCCGGUguucAUCACCAg -3'
miRNA:   3'- guCACCG---UCGUCAUGGUCA----UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 122526 0.72 0.726303
Target:  5'- gCAGgccGGCGGCGGUGgUAGUGCUGCUg -3'
miRNA:   3'- -GUCa--CCGUCGUCAUgGUCAUGGUGGu -5'
14494 5' -55 NC_003521.1 + 239992 0.72 0.736034
Target:  5'- uCGG-GGUAGuCGGUGCCuucgauccauucGGUGCCGCCAc -3'
miRNA:   3'- -GUCaCCGUC-GUCAUGG------------UCAUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 103770 0.72 0.745676
Target:  5'- gCAGgGGCcgGGCGGUGCCugAGUcaGCCGCCGg -3'
miRNA:   3'- -GUCaCCG--UCGUCAUGG--UCA--UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 60414 0.72 0.76372
Target:  5'- cCAGUaucgcGGCcgccagcaccaccAGCAGUAcuccggcgcCCAGUACCACCAa -3'
miRNA:   3'- -GUCA-----CCG-------------UCGUCAU---------GGUCAUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 216916 0.72 0.764659
Target:  5'- gCGGUGGCAGCGGaGgCGGUcgACC-CCAu -3'
miRNA:   3'- -GUCACCGUCGUCaUgGUCA--UGGuGGU- -5'
14494 5' -55 NC_003521.1 + 59609 0.71 0.773982
Target:  5'- gUAGUGGCGGCGGccCCGGcgGCgACCGc -3'
miRNA:   3'- -GUCACCGUCGUCauGGUCa-UGgUGGU- -5'
14494 5' -55 NC_003521.1 + 22898 0.71 0.792245
Target:  5'- -uGUGGCugcAGCAGUacGCCAaggACCACCAc -3'
miRNA:   3'- guCACCG---UCGUCA--UGGUca-UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 177585 0.71 0.792245
Target:  5'- aGGUGGCGGCGccGCCGGUuCCGgCCGu -3'
miRNA:   3'- gUCACCGUCGUcaUGGUCAuGGU-GGU- -5'
14494 5' -55 NC_003521.1 + 85411 0.71 0.792245
Target:  5'- ---cGGCAGCAGgccuCCGGUGCCcaGCCc -3'
miRNA:   3'- gucaCCGUCGUCau--GGUCAUGG--UGGu -5'
14494 5' -55 NC_003521.1 + 52677 0.71 0.801169
Target:  5'- gCAGcGGCAccggcagcgucgGCGGUGCCAGccgcuCCACCAg -3'
miRNA:   3'- -GUCaCCGU------------CGUCAUGGUCau---GGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.