miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14494 5' -55 NC_003521.1 + 7616 0.68 0.921538
Target:  5'- aCGGUGGCGGCGGacugucgggaacgACCgacGGUaacggcgGCCGCCAc -3'
miRNA:   3'- -GUCACCGUCGUCa------------UGG---UCA-------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 7755 0.66 0.956257
Target:  5'- aGGcGGCGGCAGUcCCAGcagaCGCCGc -3'
miRNA:   3'- gUCaCCGUCGUCAuGGUCaug-GUGGU- -5'
14494 5' -55 NC_003521.1 + 8007 0.68 0.92426
Target:  5'- cCGG-GGCAGCGccGUAgcuCCAG-ACCGCCGg -3'
miRNA:   3'- -GUCaCCGUCGU--CAU---GGUCaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 17977 0.67 0.948265
Target:  5'- -uGUGGU-GCgAGUACguGUAUCGCCAc -3'
miRNA:   3'- guCACCGuCG-UCAUGguCAUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 19123 0.73 0.672605
Target:  5'- gGGUGGCGggccgccGguGUACCAGUcggagugccucccgACCACCGa -3'
miRNA:   3'- gUCACCGU-------CguCAUGGUCA--------------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 20289 0.68 0.900219
Target:  5'- gCGGUGGaucucgccggcgcCAuGCAGcACCAGgagGCCACCAc -3'
miRNA:   3'- -GUCACC-------------GU-CGUCaUGGUCa--UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 22474 0.66 0.963029
Target:  5'- aCGGUGGCcuGCcuGGUgaugaacACCGGcACCACCGu -3'
miRNA:   3'- -GUCACCGu-CG--UCA-------UGGUCaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 22898 0.71 0.792245
Target:  5'- -uGUGGCugcAGCAGUacGCCAaggACCACCAc -3'
miRNA:   3'- guCACCG---UCGUCA--UGGUca-UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 31706 0.66 0.963029
Target:  5'- gCGGcGGCAGCAugugcgcGUGCUGGgacgccgcgGCCACCGc -3'
miRNA:   3'- -GUCaCCGUCGU-------CAUGGUCa--------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 31872 0.68 0.929528
Target:  5'- gCGGUGcG-AGCGGUACCGc-ACCGCCAg -3'
miRNA:   3'- -GUCAC-CgUCGUCAUGGUcaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 36075 0.66 0.969623
Target:  5'- aCAGggcGGCGGCGGcGCCuccAUCACCAc -3'
miRNA:   3'- -GUCa--CCGUCGUCaUGGucaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 40228 0.67 0.939362
Target:  5'- gAGgcgGGCAGCGGU-CgCAGgcGCCGCCu -3'
miRNA:   3'- gUCa--CCGUCGUCAuG-GUCa-UGGUGGu -5'
14494 5' -55 NC_003521.1 + 44074 0.67 0.939362
Target:  5'- cCGG-GGCAGCAGa--CGGUgcaggcgccgccGCCACCAc -3'
miRNA:   3'- -GUCaCCGUCGUCaugGUCA------------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 52677 0.71 0.801169
Target:  5'- gCAGcGGCAccggcagcgucgGCGGUGCCAGccgcuCCACCAg -3'
miRNA:   3'- -GUCaCCGU------------CGUCAUGGUCau---GGUGGU- -5'
14494 5' -55 NC_003521.1 + 54216 0.73 0.686672
Target:  5'- cCGGUGGUccGGCAGUACCG--ACUGCCGg -3'
miRNA:   3'- -GUCACCG--UCGUCAUGGUcaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 59609 0.71 0.773982
Target:  5'- gUAGUGGCGGCGGccCCGGcgGCgACCGc -3'
miRNA:   3'- -GUCACCGUCGUCauGGUCa-UGgUGGU- -5'
14494 5' -55 NC_003521.1 + 60414 0.72 0.76372
Target:  5'- cCAGUaucgcGGCcgccagcaccaccAGCAGUAcuccggcgcCCAGUACCACCAa -3'
miRNA:   3'- -GUCA-----CCG-------------UCGUCAU---------GGUCAUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 63075 0.69 0.887771
Target:  5'- ---gGGCAGC-GUACC-GUACCGCUg -3'
miRNA:   3'- gucaCCGUCGuCAUGGuCAUGGUGGu -5'
14494 5' -55 NC_003521.1 + 63226 0.66 0.969623
Target:  5'- ---cGGCAGCGGaacgGCCGGaaccggcggcGCCGCCAc -3'
miRNA:   3'- gucaCCGUCGUCa---UGGUCa---------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 68063 0.7 0.858993
Target:  5'- cCGGUGGCAGcCAGaaUGCCGG-GCC-CCGc -3'
miRNA:   3'- -GUCACCGUC-GUC--AUGGUCaUGGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.