miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14494 5' -55 NC_003521.1 + 31872 0.68 0.929528
Target:  5'- gCGGUGcG-AGCGGUACCGc-ACCGCCAg -3'
miRNA:   3'- -GUCAC-CgUCGUCAUGGUcaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 116824 0.69 0.894424
Target:  5'- gGGUGcuGCAGCGGUuuCCAGaccugacgGCCGCCGa -3'
miRNA:   3'- gUCAC--CGUCGUCAu-GGUCa-------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 191086 0.68 0.900852
Target:  5'- uGGUGGCGGCGGcggGCUGcGUcucguCCACCAg -3'
miRNA:   3'- gUCACCGUCGUCa--UGGU-CAu----GGUGGU- -5'
14494 5' -55 NC_003521.1 + 157206 0.68 0.907051
Target:  5'- gGGUGGgAGCGacuCCAGUcCCGCCGu -3'
miRNA:   3'- gUCACCgUCGUcauGGUCAuGGUGGU- -5'
14494 5' -55 NC_003521.1 + 212225 0.68 0.907051
Target:  5'- aCAGgaUGGUGGCGGUGCgCAGcagcCCGCCGu -3'
miRNA:   3'- -GUC--ACCGUCGUCAUG-GUCau--GGUGGU- -5'
14494 5' -55 NC_003521.1 + 163769 0.68 0.907051
Target:  5'- aCGGcGGCGGCaacaacGGUAgCGGcGCCACCAc -3'
miRNA:   3'- -GUCaCCGUCG------UCAUgGUCaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 102771 0.68 0.909467
Target:  5'- gAGcGGCAGCGGcugcgcgaugacgcGCCGGcgGCCGCCAg -3'
miRNA:   3'- gUCaCCGUCGUCa-------------UGGUCa-UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 180939 0.68 0.918757
Target:  5'- uGGUGGC-GCGGUGCCguAGU-CCGCgGg -3'
miRNA:   3'- gUCACCGuCGUCAUGG--UCAuGGUGgU- -5'
14494 5' -55 NC_003521.1 + 73141 0.68 0.918757
Target:  5'- gCGGgGGCAGCGGcGgCGGcGCCGCCu -3'
miRNA:   3'- -GUCaCCGUCGUCaUgGUCaUGGUGGu -5'
14494 5' -55 NC_003521.1 + 87622 0.69 0.887771
Target:  5'- -uGUGGCAGCA-----GGUGCCGCCGc -3'
miRNA:   3'- guCACCGUCGUcauggUCAUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 142779 0.69 0.880897
Target:  5'- ---cGGCGGCGucGUCGGUGCCACCAa -3'
miRNA:   3'- gucaCCGUCGUcaUGGUCAUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 153125 0.69 0.880897
Target:  5'- ---cGGCAGCAGgcgGCUuuGGU-CCACCAg -3'
miRNA:   3'- gucaCCGUCGUCa--UGG--UCAuGGUGGU- -5'
14494 5' -55 NC_003521.1 + 134698 0.75 0.545726
Target:  5'- uGGUGGCGGUAgGUGCCcacgGCCGCCAc -3'
miRNA:   3'- gUCACCGUCGU-CAUGGuca-UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 218330 0.73 0.706611
Target:  5'- -cGUGGCcacGGUGGUGCCGGUguucAUCACCAg -3'
miRNA:   3'- guCACCG---UCGUCAUGGUCA----UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 59609 0.71 0.773982
Target:  5'- gUAGUGGCGGCGGccCCGGcgGCgACCGc -3'
miRNA:   3'- -GUCACCGUCGUCauGGUCa-UGgUGGU- -5'
14494 5' -55 NC_003521.1 + 85411 0.71 0.792245
Target:  5'- ---cGGCAGCAGgccuCCGGUGCCcaGCCc -3'
miRNA:   3'- gucaCCGUCGUCau--GGUCAUGG--UGGu -5'
14494 5' -55 NC_003521.1 + 85470 0.7 0.818558
Target:  5'- aGGUGGUcgucGUGGUGCCGGUGCCcgcGCCc -3'
miRNA:   3'- gUCACCGu---CGUCAUGGUCAUGG---UGGu -5'
14494 5' -55 NC_003521.1 + 133053 0.7 0.82617
Target:  5'- aCAGUGGCuccAGCAGcAgCAGUcacagccaucgcaGCCGCCAc -3'
miRNA:   3'- -GUCACCG---UCGUCaUgGUCA-------------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 118287 0.7 0.843377
Target:  5'- gCGGUaGCAGCAGcacUACCAccGCCGCCGg -3'
miRNA:   3'- -GUCAcCGUCGUC---AUGGUcaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 225857 0.69 0.873807
Target:  5'- uGGUGGUgcgGGCacaGGUGCCGGUGCU-CCAu -3'
miRNA:   3'- gUCACCG---UCG---UCAUGGUCAUGGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.