miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 5' -54 NC_003521.1 + 239353 0.7 0.910538
Target:  5'- gGGCGUCUgcaGCgGGAUGcCCGUGUGCu- -3'
miRNA:   3'- -CCGUAGAg--CGgCCUGU-GGUACAUGcu -5'
14499 5' -54 NC_003521.1 + 224410 0.69 0.941627
Target:  5'- cGGUAcacCUCGCCGGccaggcGCugCGUGguggGCGAg -3'
miRNA:   3'- -CCGUa--GAGCGGCC------UGugGUACa---UGCU- -5'
14499 5' -54 NC_003521.1 + 222118 0.66 0.985834
Target:  5'- cGGCAgccacaGCCGGAUcgcgccgGCCAUG-GCGAa -3'
miRNA:   3'- -CCGUagag--CGGCCUG-------UGGUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 218092 0.66 0.985997
Target:  5'- cGGCGg--CGCCGGugACgAUGaggGCGu -3'
miRNA:   3'- -CCGUagaGCGGCCugUGgUACa--UGCu -5'
14499 5' -54 NC_003521.1 + 214619 0.73 0.808104
Target:  5'- -aCGUCUgGCCGGAUACC-UGUGCu- -3'
miRNA:   3'- ccGUAGAgCGGCCUGUGGuACAUGcu -5'
14499 5' -54 NC_003521.1 + 212150 0.66 0.990251
Target:  5'- cGGCGUag-GUCGGGaACCAgagGUGCGAg -3'
miRNA:   3'- -CCGUAgagCGGCCUgUGGUa--CAUGCU- -5'
14499 5' -54 NC_003521.1 + 209815 0.68 0.967786
Target:  5'- cGCGUcCUCGCCGG-CGCCGUcGU-CGc -3'
miRNA:   3'- cCGUA-GAGCGGCCuGUGGUA-CAuGCu -5'
14499 5' -54 NC_003521.1 + 209672 0.7 0.916287
Target:  5'- uGCAUCUCGCUGcGCAUCAaGcGCGAg -3'
miRNA:   3'- cCGUAGAGCGGCcUGUGGUaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 207622 0.66 0.990004
Target:  5'- gGGCggCUCGCCGGccuGCACCuucaccuuCGGu -3'
miRNA:   3'- -CCGuaGAGCGGCC---UGUGGuacau---GCU- -5'
14499 5' -54 NC_003521.1 + 205939 0.68 0.954128
Target:  5'- uGCGUCUCGCUGGGCugGCCcucgcaGUGCu- -3'
miRNA:   3'- cCGUAGAGCGGCCUG--UGGua----CAUGcu -5'
14499 5' -54 NC_003521.1 + 201701 0.7 0.904564
Target:  5'- gGGCAUCcCGCUGcaGACGCCcgG-ACGAc -3'
miRNA:   3'- -CCGUAGaGCGGC--CUGUGGuaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 198814 0.66 0.985834
Target:  5'- cGGCGUCU-GUCGuGcCGCCGUGUugcugcuGCGAc -3'
miRNA:   3'- -CCGUAGAgCGGC-CuGUGGUACA-------UGCU- -5'
14499 5' -54 NC_003521.1 + 197920 0.67 0.980448
Target:  5'- uGG-AUCUCGCUGGGCuCCAgaucgACGGg -3'
miRNA:   3'- -CCgUAGAGCGGCCUGuGGUaca--UGCU- -5'
14499 5' -54 NC_003521.1 + 197865 0.71 0.87847
Target:  5'- cGGCGggucgcgCUCGCUGGGCugCAg--GCGGc -3'
miRNA:   3'- -CCGUa------GAGCGGCCUGugGUacaUGCU- -5'
14499 5' -54 NC_003521.1 + 196574 0.68 0.961374
Target:  5'- cGGCGUgaCGCCGGACucCCGcGcACGGc -3'
miRNA:   3'- -CCGUAgaGCGGCCUGu-GGUaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 192280 0.69 0.937013
Target:  5'- cGGCGUCUccaCGCCGuucgucGGCACCGUccGCGGu -3'
miRNA:   3'- -CCGUAGA---GCGGC------CUGUGGUAcaUGCU- -5'
14499 5' -54 NC_003521.1 + 188025 0.67 0.980448
Target:  5'- cGCAgg-CGUCGGACAUCAgccgGUGCa- -3'
miRNA:   3'- cCGUagaGCGGCCUGUGGUa---CAUGcu -5'
14499 5' -54 NC_003521.1 + 186606 0.67 0.978276
Target:  5'- cGGCAgUCgguacUGCCGGACACCGgccagcaGCGGu -3'
miRNA:   3'- -CCGU-AGa----GCGGCCUGUGGUaca----UGCU- -5'
14499 5' -54 NC_003521.1 + 185718 0.73 0.781661
Target:  5'- cGCGUCUCGCCGGGugcggaggugauCGCCGagcggGUGCGc -3'
miRNA:   3'- cCGUAGAGCGGCCU------------GUGGUa----CAUGCu -5'
14499 5' -54 NC_003521.1 + 185214 0.75 0.696355
Target:  5'- gGGCcg--CGCgGGACugCGUGUACGAc -3'
miRNA:   3'- -CCGuagaGCGgCCUGugGUACAUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.