miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 5' -54 NC_003521.1 + 156182 0.76 0.616822
Target:  5'- cGGCAUCUCGCCGGugGCgCGUcaggaagccuacGU-CGAa -3'
miRNA:   3'- -CCGUAGAGCGGCCugUG-GUA------------CAuGCU- -5'
14499 5' -54 NC_003521.1 + 108432 0.7 0.910538
Target:  5'- aGCGUCU-GCCGGAUgACCucgcggGUGUGCGGc -3'
miRNA:   3'- cCGUAGAgCGGCCUG-UGG------UACAUGCU- -5'
14499 5' -54 NC_003521.1 + 173656 0.7 0.921809
Target:  5'- gGGCggCUgCGCgGGAC-CCAgggGUACGGa -3'
miRNA:   3'- -CCGuaGA-GCGgCCUGuGGUa--CAUGCU- -5'
14499 5' -54 NC_003521.1 + 24847 0.66 0.990251
Target:  5'- gGGCAUCaucuUCGCCGGcCACCucucGCa- -3'
miRNA:   3'- -CCGUAG----AGCGGCCuGUGGuacaUGcu -5'
14499 5' -54 NC_003521.1 + 137027 0.73 0.77258
Target:  5'- cGGuCAUCUCGCCGGAgCACgGcg-GCGAg -3'
miRNA:   3'- -CC-GUAGAGCGGCCU-GUGgUacaUGCU- -5'
14499 5' -54 NC_003521.1 + 185718 0.73 0.781661
Target:  5'- cGCGUCUCGCCGGGugcggaggugauCGCCGagcggGUGCGc -3'
miRNA:   3'- cCGUAGAGCGGCCU------------GUGGUa----CAUGCu -5'
14499 5' -54 NC_003521.1 + 27806 0.73 0.808104
Target:  5'- cGGCcggCUCGCCcGGCGCCAUgGUACa- -3'
miRNA:   3'- -CCGua-GAGCGGcCUGUGGUA-CAUGcu -5'
14499 5' -54 NC_003521.1 + 214619 0.73 0.808104
Target:  5'- -aCGUCUgGCCGGAUACC-UGUGCu- -3'
miRNA:   3'- ccGUAGAgCGGCCUGUGGuACAUGcu -5'
14499 5' -54 NC_003521.1 + 122682 0.71 0.871414
Target:  5'- uGGCG--UCGCCGGugAUCAUGgGCGu -3'
miRNA:   3'- -CCGUagAGCGGCCugUGGUACaUGCu -5'
14499 5' -54 NC_003521.1 + 39125 0.7 0.910538
Target:  5'- gGGCGUCUgcaGCgGGAUGcCCGUGUGCu- -3'
miRNA:   3'- -CCGUAGAg--CGgCCUGU-GGUACAUGcu -5'
14499 5' -54 NC_003521.1 + 113546 0.71 0.891951
Target:  5'- cGGCGUgUCGgacgugccgcgcCUGGGCGCCAUGgacgccgACGAg -3'
miRNA:   3'- -CCGUAgAGC------------GGCCUGUGGUACa------UGCU- -5'
14499 5' -54 NC_003521.1 + 135013 0.72 0.856695
Target:  5'- -cCAUCUggcUGCCGGGCACCGUGgccUGCGu -3'
miRNA:   3'- ccGUAGA---GCGGCCUGUGGUAC---AUGCu -5'
14499 5' -54 NC_003521.1 + 185214 0.75 0.696355
Target:  5'- gGGCcg--CGCgGGACugCGUGUACGAc -3'
miRNA:   3'- -CCGuagaGCGgCCUGugGUACAUGCU- -5'
14499 5' -54 NC_003521.1 + 86358 0.7 0.898368
Target:  5'- cGGCGg--UGCCGGugACCAacagcGUGCGGa -3'
miRNA:   3'- -CCGUagaGCGGCCugUGGUa----CAUGCU- -5'
14499 5' -54 NC_003521.1 + 13191 0.74 0.725557
Target:  5'- aGGCGUgC-CGCuCGGGcCGCCGUGUugGAg -3'
miRNA:   3'- -CCGUA-GaGCG-GCCU-GUGGUACAugCU- -5'
14499 5' -54 NC_003521.1 + 134755 0.72 0.833181
Target:  5'- aGGcCAUCUUuCCGGGCACCAUcgaggGCGAc -3'
miRNA:   3'- -CC-GUAGAGcGGCCUGUGGUAca---UGCU- -5'
14499 5' -54 NC_003521.1 + 1474 0.7 0.904564
Target:  5'- gGGCAUCcCGCUGcaGACGCCcgG-ACGAc -3'
miRNA:   3'- -CCGUAGaGCGGC--CUGUGGuaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 209672 0.7 0.916287
Target:  5'- uGCAUCUCGCUGcGCAUCAaGcGCGAg -3'
miRNA:   3'- cCGUAGAGCGGCcUGUGGUaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 166632 0.74 0.735149
Target:  5'- cGGCGUCgggccgcgCGCCGGGCGCCGcg-GCGc -3'
miRNA:   3'- -CCGUAGa-------GCGGCCUGUGGUacaUGCu -5'
14499 5' -54 NC_003521.1 + 20290 0.73 0.790614
Target:  5'- cGGUggAUCUCGCCGG-CGCCAUGcaGCa- -3'
miRNA:   3'- -CCG--UAGAGCGGCCuGUGGUACa-UGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.