miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 3' -59.5 NC_003521.1 + 137274 0.7 0.663257
Target:  5'- aGAGCGGGGgccccagcgaccUGGaGCUGCGGGUggcgcgGCUGc -3'
miRNA:   3'- -CUCGCUCC------------ACC-CGGCGCUCAa-----CGACc -5'
14514 3' -59.5 NC_003521.1 + 128263 0.66 0.871337
Target:  5'- aGGcCGuGGUGGGCaGCGcGUUGC-GGa -3'
miRNA:   3'- cUC-GCuCCACCCGgCGCuCAACGaCC- -5'
14514 3' -59.5 NC_003521.1 + 118718 0.72 0.53901
Target:  5'- uGGGCGAgGGgcgcggcaccggcacGGGCUGCaGGUUGCUGGu -3'
miRNA:   3'- -CUCGCU-CCa--------------CCCGGCGcUCAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 118013 0.66 0.878203
Target:  5'- cGGCGGcGUGucgcuGCCGCGGGacucggUGCUGGg -3'
miRNA:   3'- cUCGCUcCACc----CGGCGCUCa-----ACGACC- -5'
14514 3' -59.5 NC_003521.1 + 117383 0.67 0.792977
Target:  5'- cGGUGcAGGUGcGGCaCGCGcugUGCUGGc -3'
miRNA:   3'- cUCGC-UCCAC-CCG-GCGCucaACGACC- -5'
14514 3' -59.5 NC_003521.1 + 115473 0.68 0.748481
Target:  5'- cGAGCGcggacgaacAGcGUGGGCCGCGuGUcGCUc- -3'
miRNA:   3'- -CUCGC---------UC-CACCCGGCGCuCAaCGAcc -5'
14514 3' -59.5 NC_003521.1 + 104682 0.68 0.739275
Target:  5'- gGAGCucGAGG-GGGCCGUGGGcgGCg-- -3'
miRNA:   3'- -CUCG--CUCCaCCCGGCGCUCaaCGacc -5'
14514 3' -59.5 NC_003521.1 + 100230 0.69 0.682548
Target:  5'- cGGCGAGGUGGaGCUggGCGAGgUGCc-- -3'
miRNA:   3'- cUCGCUCCACC-CGG--CGCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 99340 0.68 0.783435
Target:  5'- cGGGUGAugaggaggaaggcGGUGaGGCUGCuguuGUUGCUGGu -3'
miRNA:   3'- -CUCGCU-------------CCAC-CCGGCGcu--CAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 91342 0.68 0.775517
Target:  5'- aGGCGAGGUGcuGGUCGgGAGgacGgUGGg -3'
miRNA:   3'- cUCGCUCCAC--CCGGCgCUCaa-CgACC- -5'
14514 3' -59.5 NC_003521.1 + 88648 0.66 0.871337
Target:  5'- cAGCGAGGcgcagaGGGCCGCcaGGUcGgUGGg -3'
miRNA:   3'- cUCGCUCCa-----CCCGGCGc-UCAaCgACC- -5'
14514 3' -59.5 NC_003521.1 + 84758 0.66 0.871337
Target:  5'- cGGGCGcGGc-GGCgGCGAcGUUGUUGGc -3'
miRNA:   3'- -CUCGCuCCacCCGgCGCU-CAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 77730 0.67 0.834217
Target:  5'- cGGCGGccucGGUGGGCgGCGucuGGUagugGUUGGg -3'
miRNA:   3'- cUCGCU----CCACCCGgCGC---UCAa---CGACC- -5'
14514 3' -59.5 NC_003521.1 + 77040 0.66 0.864279
Target:  5'- cGGCGGuGGUGGcGCCGCuaccGUUGUUGc -3'
miRNA:   3'- cUCGCU-CCACC-CGGCGcu--CAACGACc -5'
14514 3' -59.5 NC_003521.1 + 74633 0.67 0.801515
Target:  5'- cAGCGGGGUGGuG-CGCGGGaccCUGGa -3'
miRNA:   3'- cUCGCUCCACC-CgGCGCUCaacGACC- -5'
14514 3' -59.5 NC_003521.1 + 68384 0.84 0.106399
Target:  5'- aGAGCGAGGUGGacGCCGUGAGaugccgGCUGGg -3'
miRNA:   3'- -CUCGCUCCACC--CGGCGCUCaa----CGACC- -5'
14514 3' -59.5 NC_003521.1 + 56882 0.7 0.653574
Target:  5'- uGGCGAGGUGGaaaGCGAGa-GCUGGc -3'
miRNA:   3'- cUCGCUCCACCcggCGCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 53950 0.66 0.849603
Target:  5'- -cGCuGAGcUGGGCCGaCGAGccgUGCUGc -3'
miRNA:   3'- cuCG-CUCcACCCGGC-GCUCa--ACGACc -5'
14514 3' -59.5 NC_003521.1 + 49974 0.66 0.871337
Target:  5'- cGAGCGgcGGGUGGGUCGa-GGgaGCcGGg -3'
miRNA:   3'- -CUCGC--UCCACCCGGCgcUCaaCGaCC- -5'
14514 3' -59.5 NC_003521.1 + 47852 0.76 0.343557
Target:  5'- cGGGUGaAGGaGGGUCGCGAGcaUGCUGGa -3'
miRNA:   3'- -CUCGC-UCCaCCCGGCGCUCa-ACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.