miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 3' -59.5 NC_003521.1 + 201646 0.69 0.729985
Target:  5'- aGAGCGAcGacgugaacgaacUGGGCCGCGAGcUGCg-- -3'
miRNA:   3'- -CUCGCUcC------------ACCCGGCGCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 104682 0.68 0.739275
Target:  5'- gGAGCucGAGG-GGGCCGUGGGcgGCg-- -3'
miRNA:   3'- -CUCG--CUCCaCCCGGCGCUCaaCGacc -5'
14514 3' -59.5 NC_003521.1 + 204723 0.68 0.775517
Target:  5'- cGGCGGGGaGGGUgGCGAGggugGUgaUGGa -3'
miRNA:   3'- cUCGCUCCaCCCGgCGCUCaa--CG--ACC- -5'
14514 3' -59.5 NC_003521.1 + 117383 0.67 0.792977
Target:  5'- cGGUGcAGGUGcGGCaCGCGcugUGCUGGc -3'
miRNA:   3'- cUCGC-UCCAC-CCG-GCGCucaACGACC- -5'
14514 3' -59.5 NC_003521.1 + 23581 0.67 0.809915
Target:  5'- ---gGuGGUGGG-CGCGGGggUGCUGGc -3'
miRNA:   3'- cucgCuCCACCCgGCGCUCa-ACGACC- -5'
14514 3' -59.5 NC_003521.1 + 7727 0.67 0.826273
Target:  5'- uGGGUGGGGaGGGCggCGCGAGcgGC-GGa -3'
miRNA:   3'- -CUCGCUCCaCCCG--GCGCUCaaCGaCC- -5'
14514 3' -59.5 NC_003521.1 + 162886 0.67 0.826273
Target:  5'- -cGCGcAGGUGGGCCGCuacugccUGCaGGa -3'
miRNA:   3'- cuCGC-UCCACCCGGCGcuca---ACGaCC- -5'
14514 3' -59.5 NC_003521.1 + 148368 0.66 0.841996
Target:  5'- cGAGCGGGcaagccgagcGGGgUGCGGGgagGCUGGg -3'
miRNA:   3'- -CUCGCUCca--------CCCgGCGCUCaa-CGACC- -5'
14514 3' -59.5 NC_003521.1 + 53950 0.66 0.849603
Target:  5'- -cGCuGAGcUGGGCCGaCGAGccgUGCUGc -3'
miRNA:   3'- cuCG-CUCcACCCGGC-GCUCa--ACGACc -5'
14514 3' -59.5 NC_003521.1 + 148325 0.66 0.857032
Target:  5'- gGGGUGAGGUGGcggaccacGcCCG-GAGagGCUGGg -3'
miRNA:   3'- -CUCGCUCCACC--------C-GGCgCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 31669 0.68 0.76661
Target:  5'- -cGCGAGGUGaGCCGCGAuucgGCUa- -3'
miRNA:   3'- cuCGCUCCACcCGGCGCUcaa-CGAcc -5'
14514 3' -59.5 NC_003521.1 + 196070 0.68 0.757596
Target:  5'- cGGCGAGGUGGacuGgCGCGAGa-GCUGc -3'
miRNA:   3'- cUCGCUCCACC---CgGCGCUCaaCGACc -5'
14514 3' -59.5 NC_003521.1 + 118013 0.66 0.878203
Target:  5'- cGGCGGcGUGucgcuGCCGCGGGacucggUGCUGGg -3'
miRNA:   3'- cUCGCUcCACc----CGGCGCUCa-----ACGACC- -5'
14514 3' -59.5 NC_003521.1 + 47852 0.76 0.343557
Target:  5'- cGGGUGaAGGaGGGUCGCGAGcaUGCUGGa -3'
miRNA:   3'- -CUCGC-UCCaCCCGGCGCUCa-ACGACC- -5'
14514 3' -59.5 NC_003521.1 + 187624 0.75 0.397292
Target:  5'- cGGGCGAGccGGGCCGCGcGccGCUGGc -3'
miRNA:   3'- -CUCGCUCcaCCCGGCGCuCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 198781 0.71 0.595396
Target:  5'- uGGGCGAGGUGGGuaGC-AGcUGCgUGGu -3'
miRNA:   3'- -CUCGCUCCACCCggCGcUCaACG-ACC- -5'
14514 3' -59.5 NC_003521.1 + 13910 0.71 0.614759
Target:  5'- -cGCgGAGG-GGGCCGCGgAGgccgcGCUGGc -3'
miRNA:   3'- cuCG-CUCCaCCCGGCGC-UCaa---CGACC- -5'
14514 3' -59.5 NC_003521.1 + 155491 0.69 0.711184
Target:  5'- cGGCcugcGGcGGGCCGCGGGccaagGCUGGa -3'
miRNA:   3'- cUCGcu--CCaCCCGGCGCUCaa---CGACC- -5'
14514 3' -59.5 NC_003521.1 + 1419 0.69 0.729985
Target:  5'- aGAGCGAcGacgugaacgaacUGGGCCGCGAGcUGCg-- -3'
miRNA:   3'- -CUCGCUcC------------ACCCGGCGCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 115473 0.68 0.748481
Target:  5'- cGAGCGcggacgaacAGcGUGGGCCGCGuGUcGCUc- -3'
miRNA:   3'- -CUCGC---------UC-CACCCGGCGCuCAaCGAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.