Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14520 | 5' | -60.3 | NC_003521.1 | + | 116593 | 0.66 | 0.837866 |
Target: 5'- -cGCGGcCCUCCcuGCAaguCGCUGCGGc- -3' miRNA: 3'- caUGCCuGGAGGu-CGU---GCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 196633 | 0.66 | 0.837866 |
Target: 5'- -aGCGGACUUUCucuGCGCuCuCGCGGAg -3' miRNA: 3'- caUGCCUGGAGGu--CGUGcG-GCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 7453 | 0.66 | 0.837866 |
Target: 5'- --cCGGAUC-CCGGCgACGCaucCGCGGAUc -3' miRNA: 3'- cauGCCUGGaGGUCG-UGCG---GCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 183914 | 0.66 | 0.837866 |
Target: 5'- -gGCGGugCUgCGGCGCuGUCGCGa-- -3' miRNA: 3'- caUGCCugGAgGUCGUG-CGGCGCcua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 117068 | 0.66 | 0.837866 |
Target: 5'- -cGCGGAgCCggCGGuCACGCCGUGcGAUa -3' miRNA: 3'- caUGCCU-GGagGUC-GUGCGGCGC-CUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 134482 | 0.66 | 0.829982 |
Target: 5'- aGUuuGGugCUCU-GCACGCUcugGCGGAUg -3' miRNA: 3'- -CAugCCugGAGGuCGUGCGG---CGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 111803 | 0.66 | 0.829982 |
Target: 5'- cUGCGGGugcCCUCUGGCgGCGCCaGCGaGAUc -3' miRNA: 3'- cAUGCCU---GGAGGUCG-UGCGG-CGC-CUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 167823 | 0.66 | 0.829981 |
Target: 5'- -aGCuGGACCcCCccgGGCAcgacCGCCGCGGGc -3' miRNA: 3'- caUG-CCUGGaGG---UCGU----GCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 201598 | 0.66 | 0.827584 |
Target: 5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3' miRNA: 3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 1371 | 0.66 | 0.827584 |
Target: 5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3' miRNA: 3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 172754 | 0.66 | 0.821935 |
Target: 5'- uUGCgGGGCCcggcauUCUGGCugccaccggggGCGCCGCGGAc -3' miRNA: 3'- cAUG-CCUGG------AGGUCG-----------UGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 165641 | 0.66 | 0.821935 |
Target: 5'- -cACGGugUUgagcagCAGCACGCCGCGcGGc -3' miRNA: 3'- caUGCCugGAg-----GUCGUGCGGCGC-CUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 182175 | 0.66 | 0.821935 |
Target: 5'- -gACGGACggCCGGCGCGUgG-GGAUu -3' miRNA: 3'- caUGCCUGgaGGUCGUGCGgCgCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 185579 | 0.66 | 0.821935 |
Target: 5'- -cGCGGGCUcgCCGGCGaGCCGCucGGGg -3' miRNA: 3'- caUGCCUGGa-GGUCGUgCGGCG--CCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 87015 | 0.66 | 0.821935 |
Target: 5'- -aACGGGCgUgCugGGCACGCUGCGcGAg -3' miRNA: 3'- caUGCCUGgAgG--UCGUGCGGCGC-CUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 72159 | 0.66 | 0.821935 |
Target: 5'- -cAgGGACCUCCGGC--GCCGuCGGc- -3' miRNA: 3'- caUgCCUGGAGGUCGugCGGC-GCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 30681 | 0.66 | 0.821122 |
Target: 5'- -cGCGauGACCUCaugaGGCuuauaacaacgcgGCGCCGCGGGc -3' miRNA: 3'- caUGC--CUGGAGg---UCG-------------UGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 95832 | 0.66 | 0.821121 |
Target: 5'- -cGCGaGGCCUCgguGGCAUGCCGCuggcucaGGAUg -3' miRNA: 3'- caUGC-CUGGAGg--UCGUGCGGCG-------CCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 200337 | 0.66 | 0.813732 |
Target: 5'- --uCGGGCCggCGGguCGUCGCGGGg -3' miRNA: 3'- cauGCCUGGagGUCguGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 82621 | 0.66 | 0.813732 |
Target: 5'- ---aGGAgCUCCAuaCACGCCGcCGGAg -3' miRNA: 3'- caugCCUgGAGGUc-GUGCGGC-GCCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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