miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 116593 0.66 0.837866
Target:  5'- -cGCGGcCCUCCcuGCAaguCGCUGCGGc- -3'
miRNA:   3'- caUGCCuGGAGGu-CGU---GCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 196633 0.66 0.837866
Target:  5'- -aGCGGACUUUCucuGCGCuCuCGCGGAg -3'
miRNA:   3'- caUGCCUGGAGGu--CGUGcG-GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 7453 0.66 0.837866
Target:  5'- --cCGGAUC-CCGGCgACGCaucCGCGGAUc -3'
miRNA:   3'- cauGCCUGGaGGUCG-UGCG---GCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 183914 0.66 0.837866
Target:  5'- -gGCGGugCUgCGGCGCuGUCGCGa-- -3'
miRNA:   3'- caUGCCugGAgGUCGUG-CGGCGCcua -5'
14520 5' -60.3 NC_003521.1 + 117068 0.66 0.837866
Target:  5'- -cGCGGAgCCggCGGuCACGCCGUGcGAUa -3'
miRNA:   3'- caUGCCU-GGagGUC-GUGCGGCGC-CUA- -5'
14520 5' -60.3 NC_003521.1 + 134482 0.66 0.829982
Target:  5'- aGUuuGGugCUCU-GCACGCUcugGCGGAUg -3'
miRNA:   3'- -CAugCCugGAGGuCGUGCGG---CGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 111803 0.66 0.829982
Target:  5'- cUGCGGGugcCCUCUGGCgGCGCCaGCGaGAUc -3'
miRNA:   3'- cAUGCCU---GGAGGUCG-UGCGG-CGC-CUA- -5'
14520 5' -60.3 NC_003521.1 + 167823 0.66 0.829981
Target:  5'- -aGCuGGACCcCCccgGGCAcgacCGCCGCGGGc -3'
miRNA:   3'- caUG-CCUGGaGG---UCGU----GCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 201598 0.66 0.827584
Target:  5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3'
miRNA:   3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 1371 0.66 0.827584
Target:  5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3'
miRNA:   3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 172754 0.66 0.821935
Target:  5'- uUGCgGGGCCcggcauUCUGGCugccaccggggGCGCCGCGGAc -3'
miRNA:   3'- cAUG-CCUGG------AGGUCG-----------UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 165641 0.66 0.821935
Target:  5'- -cACGGugUUgagcagCAGCACGCCGCGcGGc -3'
miRNA:   3'- caUGCCugGAg-----GUCGUGCGGCGC-CUa -5'
14520 5' -60.3 NC_003521.1 + 182175 0.66 0.821935
Target:  5'- -gACGGACggCCGGCGCGUgG-GGAUu -3'
miRNA:   3'- caUGCCUGgaGGUCGUGCGgCgCCUA- -5'
14520 5' -60.3 NC_003521.1 + 185579 0.66 0.821935
Target:  5'- -cGCGGGCUcgCCGGCGaGCCGCucGGGg -3'
miRNA:   3'- caUGCCUGGa-GGUCGUgCGGCG--CCUa -5'
14520 5' -60.3 NC_003521.1 + 87015 0.66 0.821935
Target:  5'- -aACGGGCgUgCugGGCACGCUGCGcGAg -3'
miRNA:   3'- caUGCCUGgAgG--UCGUGCGGCGC-CUa -5'
14520 5' -60.3 NC_003521.1 + 72159 0.66 0.821935
Target:  5'- -cAgGGACCUCCGGC--GCCGuCGGc- -3'
miRNA:   3'- caUgCCUGGAGGUCGugCGGC-GCCua -5'
14520 5' -60.3 NC_003521.1 + 30681 0.66 0.821122
Target:  5'- -cGCGauGACCUCaugaGGCuuauaacaacgcgGCGCCGCGGGc -3'
miRNA:   3'- caUGC--CUGGAGg---UCG-------------UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 95832 0.66 0.821121
Target:  5'- -cGCGaGGCCUCgguGGCAUGCCGCuggcucaGGAUg -3'
miRNA:   3'- caUGC-CUGGAGg--UCGUGCGGCG-------CCUA- -5'
14520 5' -60.3 NC_003521.1 + 200337 0.66 0.813732
Target:  5'- --uCGGGCCggCGGguCGUCGCGGGg -3'
miRNA:   3'- cauGCCUGGagGUCguGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 82621 0.66 0.813732
Target:  5'- ---aGGAgCUCCAuaCACGCCGcCGGAg -3'
miRNA:   3'- caugCCUgGAGGUc-GUGCGGC-GCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.