miRNA display CGI


Results 1 - 20 of 428 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 3' -56.6 NC_003521.1 + 93410 0.66 0.935459
Target:  5'- gGAacgUGGUCGUCcuCACCGCCACGc -3'
miRNA:   3'- gCUguuGCCAGCGGucGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 223966 0.66 0.940095
Target:  5'- uCGAUguAGCGGUCGUUgucaGGCACCACg--- -3'
miRNA:   3'- -GCUG--UUGCCAGCGG----UCGUGGUGgugu -5'
14534 3' -56.6 NC_003521.1 + 168604 0.66 0.934505
Target:  5'- gGACAugGGcugcugggcgugCGCCAucugcuguugcuGCugCGCCACGg -3'
miRNA:   3'- gCUGUugCCa-----------GCGGU------------CGugGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 118935 0.66 0.940095
Target:  5'- gGGCGGCGGcguccCGUCAGgGCCAgCGCc -3'
miRNA:   3'- gCUGUUGCCa----GCGGUCgUGGUgGUGu -5'
14534 3' -56.6 NC_003521.1 + 49720 0.66 0.957905
Target:  5'- aCGAUAGaacUGGUggacgagacgcagccCGCCGcCGCCACCACGg -3'
miRNA:   3'- -GCUGUU---GCCA---------------GCGGUcGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 216980 0.66 0.935459
Target:  5'- aGAC-ACaG-CGCCAGCAggucggccucCCGCCACGa -3'
miRNA:   3'- gCUGuUGcCaGCGGUCGU----------GGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 149469 0.66 0.940095
Target:  5'- aCGACGcgcucuuucGCGGcuUCGCCGGacagaCGCCGCUGCGc -3'
miRNA:   3'- -GCUGU---------UGCC--AGCGGUC-----GUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 142650 0.66 0.940095
Target:  5'- gCGGCcucAGCGGUCgGCgCAGCGCCGUCAg- -3'
miRNA:   3'- -GCUG---UUGCCAG-CG-GUCGUGGUGGUgu -5'
14534 3' -56.6 NC_003521.1 + 28152 0.66 0.940095
Target:  5'- gCGACGGCGG-CGaCCAuGC-CCGCgACGc -3'
miRNA:   3'- -GCUGUUGCCaGC-GGU-CGuGGUGgUGU- -5'
14534 3' -56.6 NC_003521.1 + 219787 0.66 0.940095
Target:  5'- gCGACAGCGGuggaucUCGCCguGGCGuuacCCGCCucCAg -3'
miRNA:   3'- -GCUGUUGCC------AGCGG--UCGU----GGUGGu-GU- -5'
14534 3' -56.6 NC_003521.1 + 118719 0.66 0.944511
Target:  5'- gGGCGAgGGgCG-CGGCACCGgCACGg -3'
miRNA:   3'- gCUGUUgCCaGCgGUCGUGGUgGUGU- -5'
14534 3' -56.6 NC_003521.1 + 43498 0.66 0.940095
Target:  5'- -cGCGGCGGccaacaucCGUCAGCGCCuGCCGCc -3'
miRNA:   3'- gcUGUUGCCa-------GCGGUCGUGG-UGGUGu -5'
14534 3' -56.6 NC_003521.1 + 154462 0.66 0.940095
Target:  5'- cCGcACGcuguUGGUCaCCGGCACCGCCGg- -3'
miRNA:   3'- -GC-UGUu---GCCAGcGGUCGUGGUGGUgu -5'
14534 3' -56.6 NC_003521.1 + 217484 0.66 0.944511
Target:  5'- aGACAcagcaggaacguGCaGGUgGCCuGCAUgGCCACGg -3'
miRNA:   3'- gCUGU------------UG-CCAgCGGuCGUGgUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 203385 0.66 0.935459
Target:  5'- -cGCcGCGGUCGCCucAGguCCcgGCCACGc -3'
miRNA:   3'- gcUGuUGCCAGCGG--UCguGG--UGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 61846 0.66 0.944511
Target:  5'- gGGCGccgcggaaccGCGG-CGCCuguccauGCgACCACCACGg -3'
miRNA:   3'- gCUGU----------UGCCaGCGGu------CG-UGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 120588 0.66 0.935459
Target:  5'- aCGGC-GCGGcCGCCGGCuCCugC-CGg -3'
miRNA:   3'- -GCUGuUGCCaGCGGUCGuGGugGuGU- -5'
14534 3' -56.6 NC_003521.1 + 143118 0.66 0.940095
Target:  5'- gGACGACGaGUCgGCCAcCACCgACgGCGa -3'
miRNA:   3'- gCUGUUGC-CAG-CGGUcGUGG-UGgUGU- -5'
14534 3' -56.6 NC_003521.1 + 69084 0.66 0.944511
Target:  5'- gGGCAucaguuCGGUCGgCAGUuccaaCACCACGc -3'
miRNA:   3'- gCUGUu-----GCCAGCgGUCGug---GUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 239723 0.66 0.935459
Target:  5'- gGACGAUGGUgGCCaccAGCACgAUC-CAg -3'
miRNA:   3'- gCUGUUGCCAgCGG---UCGUGgUGGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.