miRNA display CGI


Results 1 - 20 of 428 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 3' -56.6 NC_003521.1 + 1050 0.67 0.923427
Target:  5'- cCGGCGuCGGggccaccgaccugCGCCAGCucUCGCCGCGc -3'
miRNA:   3'- -GCUGUuGCCa------------GCGGUCGu-GGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 1422 0.69 0.862746
Target:  5'- gCGACGACgugaacgaacugGGcCGCgAGCugCGCCGCc -3'
miRNA:   3'- -GCUGUUG------------CCaGCGgUCGugGUGGUGu -5'
14534 3' -56.6 NC_003521.1 + 2014 0.66 0.944511
Target:  5'- gGAC-ACGG-CGUC-GCGCC-CCACAa -3'
miRNA:   3'- gCUGuUGCCaGCGGuCGUGGuGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 4314 0.67 0.932571
Target:  5'- gGACGGcCGGggGCUcgaccguccaugccuGGCGCCACCGCc -3'
miRNA:   3'- gCUGUU-GCCagCGG---------------UCGUGGUGGUGu -5'
14534 3' -56.6 NC_003521.1 + 5529 0.72 0.696585
Target:  5'- -aGCGACGGUgacggcaGCCGGCGCgGCCGCc -3'
miRNA:   3'- gcUGUUGCCAg------CGGUCGUGgUGGUGu -5'
14534 3' -56.6 NC_003521.1 + 6080 0.72 0.70627
Target:  5'- gCGACGGcCGGUgCGgCGGCGuuCCGCCACGg -3'
miRNA:   3'- -GCUGUU-GCCA-GCgGUCGU--GGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 6223 0.71 0.753655
Target:  5'- uGACGGCGGUCcgaauggaGaCCGGCGCUcCCGCGg -3'
miRNA:   3'- gCUGUUGCCAG--------C-GGUCGUGGuGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 7443 0.68 0.883797
Target:  5'- gGAC-GCGG-CGCaCAGCACCA-CGCGg -3'
miRNA:   3'- gCUGuUGCCaGCG-GUCGUGGUgGUGU- -5'
14534 3' -56.6 NC_003521.1 + 7639 0.7 0.79855
Target:  5'- aCGAcCGACGGUaa-CGGCgGCCGCCACGg -3'
miRNA:   3'- -GCU-GUUGCCAgcgGUCG-UGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 7757 0.72 0.70627
Target:  5'- gCGGCGGCaGUC-CCAGCAgaCGCCGCAg -3'
miRNA:   3'- -GCUGUUGcCAGcGGUCGUg-GUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 8452 0.66 0.944511
Target:  5'- aGACggUGGaccucCGCUucgcGGUGCCGCCGCGa -3'
miRNA:   3'- gCUGuuGCCa----GCGG----UCGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 13443 0.66 0.944511
Target:  5'- gGACGACGGaCGUCaAGCGCaGCgGCGg -3'
miRNA:   3'- gCUGUUGCCaGCGG-UCGUGgUGgUGU- -5'
14534 3' -56.6 NC_003521.1 + 14161 0.66 0.948708
Target:  5'- aGAgGACGaGaucaUCGUCAGCGCCaagaagGCCGCGa -3'
miRNA:   3'- gCUgUUGC-C----AGCGGUCGUGG------UGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 14454 0.66 0.952689
Target:  5'- -uGCGGCGG-CGUCAGCcGCCGcucCCGCGg -3'
miRNA:   3'- gcUGUUGCCaGCGGUCG-UGGU---GGUGU- -5'
14534 3' -56.6 NC_003521.1 + 14952 0.67 0.928596
Target:  5'- aGACGcgcAUGGagcaccgcaccugUGCCcGCACCACCACGa -3'
miRNA:   3'- gCUGU---UGCCa------------GCGGuCGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 15704 0.66 0.952689
Target:  5'- uCGACcagguGCuGUCGCuCGGCAUC-CCGCAc -3'
miRNA:   3'- -GCUGu----UGcCAGCG-GUCGUGGuGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 16612 0.7 0.780957
Target:  5'- gCGACuACGGgCGUCAGUACCGCUg-- -3'
miRNA:   3'- -GCUGuUGCCaGCGGUCGUGGUGGugu -5'
14534 3' -56.6 NC_003521.1 + 16794 0.71 0.760114
Target:  5'- gGGCGACGG-CGCCcgccccgaccgccgGGC-CCGCCGCu -3'
miRNA:   3'- gCUGUUGCCaGCGG--------------UCGuGGUGGUGu -5'
14534 3' -56.6 NC_003521.1 + 17043 0.71 0.725457
Target:  5'- aCGACAACGGcagCaCCAGCAgCGCCgACGa -3'
miRNA:   3'- -GCUGUUGCCa--GcGGUCGUgGUGG-UGU- -5'
14534 3' -56.6 NC_003521.1 + 17478 0.68 0.869963
Target:  5'- aGACGACGGcacCGgUAGCGgCGCCGCc -3'
miRNA:   3'- gCUGUUGCCa--GCgGUCGUgGUGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.