miRNA display CGI


Results 1 - 20 of 428 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 3' -56.6 NC_003521.1 + 164399 1.09 0.00448
Target:  5'- aCGACAACGGUCGCCAGCACCACCACAc -3'
miRNA:   3'- -GCUGUUGCCAGCGGUCGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 40233 0.84 0.183639
Target:  5'- gGGCAGCGGUCGCaGGCGCCGCCuccgGCAg -3'
miRNA:   3'- gCUGUUGCCAGCGgUCGUGGUGG----UGU- -5'
14534 3' -56.6 NC_003521.1 + 240461 0.84 0.183639
Target:  5'- gGGCAGCGGUCGCaGGCGCCGCCuccgGCAg -3'
miRNA:   3'- gCUGUUGCCAGCGgUCGUGGUGG----UGU- -5'
14534 3' -56.6 NC_003521.1 + 60410 0.82 0.233067
Target:  5'- aCGACcaguaucGCGGcCGCCAGCACCACCAgCAg -3'
miRNA:   3'- -GCUGu------UGCCaGCGGUCGUGGUGGU-GU- -5'
14534 3' -56.6 NC_003521.1 + 223807 0.81 0.244207
Target:  5'- aGACGACGGgccugCGCCGcCGCCACCGCGg -3'
miRNA:   3'- gCUGUUGCCa----GCGGUcGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 100256 0.81 0.255786
Target:  5'- cCGACGACGagcuGUCGCCGcCGCCGCCGCAg -3'
miRNA:   3'- -GCUGUUGC----CAGCGGUcGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 56288 0.8 0.286699
Target:  5'- aGAC--CGGUCGUCAGCAUCACCACc -3'
miRNA:   3'- gCUGuuGCCAGCGGUCGUGGUGGUGu -5'
14534 3' -56.6 NC_003521.1 + 123584 0.8 0.299864
Target:  5'- uGGCGGCGG-CGCCGGgaGCCGCCGCGg -3'
miRNA:   3'- gCUGUUGCCaGCGGUCg-UGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 80488 0.8 0.299864
Target:  5'- uCGACGACGGagGCCAccGCGCCGcCCACGg -3'
miRNA:   3'- -GCUGUUGCCagCGGU--CGUGGU-GGUGU- -5'
14534 3' -56.6 NC_003521.1 + 68424 0.8 0.299864
Target:  5'- gCGGCGACGGcucCGCCGGCGCCccucaACCGCGu -3'
miRNA:   3'- -GCUGUUGCCa--GCGGUCGUGG-----UGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 96766 0.79 0.342139
Target:  5'- aGAgAACGGUCGCCGuCGCCGCCgGCAg -3'
miRNA:   3'- gCUgUUGCCAGCGGUcGUGGUGG-UGU- -5'
14534 3' -56.6 NC_003521.1 + 113810 0.79 0.349589
Target:  5'- gCGGCGGC-GUCGUCgGGCACCGCCACGu -3'
miRNA:   3'- -GCUGUUGcCAGCGG-UCGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 143162 0.78 0.38855
Target:  5'- uCGACGAUcccgugggGGUCGgacCCGGCGCCGCCGCGa -3'
miRNA:   3'- -GCUGUUG--------CCAGC---GGUCGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 164458 0.78 0.396677
Target:  5'- gCGGCcgucACGGUCGCCGcuGcCGCCGCCGCAg -3'
miRNA:   3'- -GCUGu---UGCCAGCGGU--C-GUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 138049 0.77 0.430254
Target:  5'- gGGCuGugGGUCGCCcGCgACCGCCGCGg -3'
miRNA:   3'- gCUG-UugCCAGCGGuCG-UGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 161580 0.77 0.430254
Target:  5'- gGAgAACGuGUCGCC-GCGCUACCGCGg -3'
miRNA:   3'- gCUgUUGC-CAGCGGuCGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 30338 0.76 0.456502
Target:  5'- gCGcCAGCGaGUCGgCGGCGCgCACCACAa -3'
miRNA:   3'- -GCuGUUGC-CAGCgGUCGUG-GUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 224979 0.76 0.456502
Target:  5'- uCG-UAGCGGUCGCCcaccAGCACCACgCACu -3'
miRNA:   3'- -GCuGUUGCCAGCGG----UCGUGGUG-GUGu -5'
14534 3' -56.6 NC_003521.1 + 73145 0.76 0.465442
Target:  5'- gGGCAGCGG-CGgCGGCGCCGCCuCGg -3'
miRNA:   3'- gCUGUUGCCaGCgGUCGUGGUGGuGU- -5'
14534 3' -56.6 NC_003521.1 + 199708 0.76 0.492788
Target:  5'- gGACAGCaacuGGgUGaCCAGCACCACCGCGu -3'
miRNA:   3'- gCUGUUG----CCaGC-GGUCGUGGUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.