Results 1 - 20 of 428 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14534 | 3' | -56.6 | NC_003521.1 | + | 35026 | 0.74 | 0.608096 |
Target: 5'- cCGGCGgacGCGGUugggcacgcucaUGCCgugcGGCGCCACCACAc -3' miRNA: 3'- -GCUGU---UGCCA------------GCGG----UCGUGGUGGUGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 73145 | 0.76 | 0.465442 |
Target: 5'- gGGCAGCGG-CGgCGGCGCCGCCuCGg -3' miRNA: 3'- gCUGUUGCCaGCgGUCGUGGUGGuGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 157965 | 0.75 | 0.511422 |
Target: 5'- gCGACGACGG-CGCUGGUagcgacGCCGCCGCc -3' miRNA: 3'- -GCUGUUGCCaGCGGUCG------UGGUGGUGu -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 196728 | 0.75 | 0.511422 |
Target: 5'- gCGGCGACGGUgguggCGgCGGCGCCugCACc -3' miRNA: 3'- -GCUGUUGCCA-----GCgGUCGUGGugGUGu -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 142778 | 0.75 | 0.520848 |
Target: 5'- gCGGCGGC-GUCGUCGGUGCCACCAa- -3' miRNA: 3'- -GCUGUUGcCAGCGGUCGUGGUGGUgu -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 117239 | 0.75 | 0.539898 |
Target: 5'- -cGCGGCGGcUC-CCGGCGCCGCCGCc -3' miRNA: 3'- gcUGUUGCC-AGcGGUCGUGGUGGUGu -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 102773 | 0.74 | 0.555305 |
Target: 5'- gCGGCAGCGGcugcgcgaugacgCGCCGGCGgCCGCCAg- -3' miRNA: 3'- -GCUGUUGCCa------------GCGGUCGU-GGUGGUgu -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 63225 | 0.74 | 0.566944 |
Target: 5'- cCGGCAGCGGaacggccggaacCGgCGGCGCCGCCACc -3' miRNA: 3'- -GCUGUUGCCa-----------GCgGUCGUGGUGGUGu -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 26775 | 0.74 | 0.588434 |
Target: 5'- uGACGAUGGggacgCGCUcggGGgGCCACCGCAg -3' miRNA: 3'- gCUGUUGCCa----GCGG---UCgUGGUGGUGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 30338 | 0.76 | 0.456502 |
Target: 5'- gCGcCAGCGaGUCGgCGGCGCgCACCACAa -3' miRNA: 3'- -GCuGUUGC-CAGCgGUCGUG-GUGGUGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 224979 | 0.76 | 0.456502 |
Target: 5'- uCG-UAGCGGUCGCCcaccAGCACCACgCACu -3' miRNA: 3'- -GCuGUUGCCAGCGG----UCGUGGUG-GUGu -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 138049 | 0.77 | 0.430254 |
Target: 5'- gGGCuGugGGUCGCCcGCgACCGCCGCGg -3' miRNA: 3'- gCUG-UugCCAGCGGuCG-UGGUGGUGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 240461 | 0.84 | 0.183639 |
Target: 5'- gGGCAGCGGUCGCaGGCGCCGCCuccgGCAg -3' miRNA: 3'- gCUGUUGCCAGCGgUCGUGGUGG----UGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 223807 | 0.81 | 0.244207 |
Target: 5'- aGACGACGGgccugCGCCGcCGCCACCGCGg -3' miRNA: 3'- gCUGUUGCCa----GCGGUcGUGGUGGUGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 100256 | 0.81 | 0.255786 |
Target: 5'- cCGACGACGagcuGUCGCCGcCGCCGCCGCAg -3' miRNA: 3'- -GCUGUUGC----CAGCGGUcGUGGUGGUGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 68424 | 0.8 | 0.299864 |
Target: 5'- gCGGCGACGGcucCGCCGGCGCCccucaACCGCGu -3' miRNA: 3'- -GCUGUUGCCa--GCGGUCGUGG-----UGGUGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 80488 | 0.8 | 0.299864 |
Target: 5'- uCGACGACGGagGCCAccGCGCCGcCCACGg -3' miRNA: 3'- -GCUGUUGCCagCGGU--CGUGGU-GGUGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 96766 | 0.79 | 0.342139 |
Target: 5'- aGAgAACGGUCGCCGuCGCCGCCgGCAg -3' miRNA: 3'- gCUgUUGCCAGCGGUcGUGGUGG-UGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 143162 | 0.78 | 0.38855 |
Target: 5'- uCGACGAUcccgugggGGUCGgacCCGGCGCCGCCGCGa -3' miRNA: 3'- -GCUGUUG--------CCAGC---GGUCGUGGUGGUGU- -5' |
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14534 | 3' | -56.6 | NC_003521.1 | + | 164458 | 0.78 | 0.396677 |
Target: 5'- gCGGCcgucACGGUCGCCGcuGcCGCCGCCGCAg -3' miRNA: 3'- -GCUGu---UGCCAGCGGU--C-GUGGUGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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