Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14545 | 3' | -53.5 | NC_003521.1 | + | 166862 | 0.66 | 0.988534 |
Target: 5'- uGGCGCGgcgggcgCA-GGUcGUaCAUCAAGUCCg -3' miRNA: 3'- -CUGCGCa------GUaCCA-CGaGUGGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 181061 | 0.66 | 0.98706 |
Target: 5'- -cCGCuGaUCAcgaaGcUGCUCACCAGGUCCg -3' miRNA: 3'- cuGCG-C-AGUa---CcACGAGUGGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 170934 | 0.66 | 0.985444 |
Target: 5'- cGugGUGUUgcguuUGGUGCUgACCAuGaUCCc -3' miRNA: 3'- -CugCGCAGu----ACCACGAgUGGUuC-AGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 16711 | 0.66 | 0.991088 |
Target: 5'- aGACGCG-CGUGaUGCgCGgCGAGUUCg -3' miRNA: 3'- -CUGCGCaGUACcACGaGUgGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 224318 | 0.66 | 0.989874 |
Target: 5'- aGACGCccccGUCAcGGUGaCUCgcGCUGAGUCg -3' miRNA: 3'- -CUGCG----CAGUaCCAC-GAG--UGGUUCAGg -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 23587 | 0.66 | 0.989874 |
Target: 5'- gGGCGCGgg--GGUGCUgGCCugcaUCCu -3' miRNA: 3'- -CUGCGCaguaCCACGAgUGGuuc-AGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 175779 | 0.66 | 0.988534 |
Target: 5'- aGGCGCGUCAUuagccGGgGCUgCACgCGGG-CCa -3' miRNA: 3'- -CUGCGCAGUA-----CCaCGA-GUG-GUUCaGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 99254 | 0.66 | 0.98706 |
Target: 5'- cGCGCGUCGUc--GCgCGCgAGGUCCa -3' miRNA: 3'- cUGCGCAGUAccaCGaGUGgUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 17443 | 0.66 | 0.984931 |
Target: 5'- -cCGCGUCggGGcgccgcgaugucgcUGCUgACCAAGgCCg -3' miRNA: 3'- cuGCGCAGuaCC--------------ACGAgUGGUUCaGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 5213 | 0.66 | 0.989874 |
Target: 5'- cACGCGguc-GG-GCUCcgcCCGAGUCCg -3' miRNA: 3'- cUGCGCaguaCCaCGAGu--GGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 19563 | 0.66 | 0.98706 |
Target: 5'- cGCGUGcUCgGUGGUcUUCACCAccacGGUCCa -3' miRNA: 3'- cUGCGC-AG-UACCAcGAGUGGU----UCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 235179 | 0.66 | 0.988534 |
Target: 5'- -uCGCGUCAUGGUGgaaUC-CCAcGcCCu -3' miRNA: 3'- cuGCGCAGUACCACg--AGuGGUuCaGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 188769 | 0.66 | 0.988534 |
Target: 5'- -cCGCGUCAucugccgcUGcUGCUCGuCUggGUCCc -3' miRNA: 3'- cuGCGCAGU--------ACcACGAGU-GGuuCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 107668 | 0.66 | 0.989486 |
Target: 5'- gGACGCGgaacauauuacggcUCAUGGcGUUgGCCAGGUa- -3' miRNA: 3'- -CUGCGC--------------AGUACCaCGAgUGGUUCAgg -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 137960 | 0.66 | 0.989874 |
Target: 5'- aGCGCGUgugguaugccgaCGUGGUGCgcuguguccgCGCgCAGGUCg -3' miRNA: 3'- cUGCGCA------------GUACCACGa---------GUG-GUUCAGg -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 200394 | 0.66 | 0.991088 |
Target: 5'- cGCGCGagcaccuggcCGUGGUGgacagCACCGAGUUCg -3' miRNA: 3'- cUGCGCa---------GUACCACga---GUGGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 48989 | 0.66 | 0.991088 |
Target: 5'- aGGCGCugaggaaCGUGcUGCgggaCGCCGAGUCCa -3' miRNA: 3'- -CUGCGca-----GUACcACGa---GUGGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 175168 | 0.66 | 0.98706 |
Target: 5'- -uCGCGg-AUGGcGUUCuCCAGGUCCu -3' miRNA: 3'- cuGCGCagUACCaCGAGuGGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 85471 | 0.67 | 0.97522 |
Target: 5'- gGugGuCGUCGUGGUGCcggugcccgcgccccCGCCGGGaCCc -3' miRNA: 3'- -CugC-GCAGUACCACGa--------------GUGGUUCaGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 137488 | 0.67 | 0.974967 |
Target: 5'- cGGCGUGUCGcGGcGC-CGCgAGGUCUg -3' miRNA: 3'- -CUGCGCAGUaCCaCGaGUGgUUCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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