Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14545 | 3' | -53.5 | NC_003521.1 | + | 19563 | 0.66 | 0.98706 |
Target: 5'- cGCGUGcUCgGUGGUcUUCACCAccacGGUCCa -3' miRNA: 3'- cUGCGC-AG-UACCAcGAGUGGU----UCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 225661 | 0.68 | 0.97234 |
Target: 5'- --gGUGUCGUagcGGUGCagCACCAaggcguuggGGUCCa -3' miRNA: 3'- cugCGCAGUA---CCACGa-GUGGU---------UCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 137488 | 0.67 | 0.974967 |
Target: 5'- cGGCGUGUCGcGGcGC-CGCgAGGUCUg -3' miRNA: 3'- -CUGCGCAGUaCCaCGaGUGgUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 85471 | 0.67 | 0.97522 |
Target: 5'- gGugGuCGUCGUGGUGCcggugcccgcgccccCGCCGGGaCCc -3' miRNA: 3'- -CugC-GCAGUACCACGa--------------GUGGUUCaGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 126633 | 0.67 | 0.977408 |
Target: 5'- uGAUGuCGUCGUuGaUGCccgagccgaUCACCGGGUCCg -3' miRNA: 3'- -CUGC-GCAGUAcC-ACG---------AGUGGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 203984 | 0.67 | 0.97945 |
Target: 5'- cGAgGCGUaggacgaCAUGGacgacgaGCUCAugcCCGAGUCCg -3' miRNA: 3'- -CUgCGCA-------GUACCa------CGAGU---GGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 142779 | 0.67 | 0.979668 |
Target: 5'- cGGCgGCGUCGUcGGUGC-CACCAAc--- -3' miRNA: 3'- -CUG-CGCAGUA-CCACGaGUGGUUcagg -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 170934 | 0.66 | 0.985444 |
Target: 5'- cGugGUGUUgcguuUGGUGCUgACCAuGaUCCc -3' miRNA: 3'- -CugCGCAGu----ACCACGAgUGGUuC-AGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 181061 | 0.66 | 0.98706 |
Target: 5'- -cCGCuGaUCAcgaaGcUGCUCACCAGGUCCg -3' miRNA: 3'- cuGCG-C-AGUa---CcACGAGUGGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 224723 | 0.68 | 0.96952 |
Target: 5'- -cCGCc-CGUGGUGCUCGCCGacgcAGgcggCCa -3' miRNA: 3'- cuGCGcaGUACCACGAGUGGU----UCa---GG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 225846 | 0.68 | 0.963275 |
Target: 5'- cGGCGCGcUCgugGUGGUGCggGCaCAGGUgCCg -3' miRNA: 3'- -CUGCGC-AG---UACCACGagUG-GUUCA-GG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 210663 | 0.69 | 0.953503 |
Target: 5'- aGACGCGgagCAUGGcccaauagucccccUGauaccacaugugCACCAAGUCCa -3' miRNA: 3'- -CUGCGCa--GUACC--------------ACga----------GUGGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 214354 | 0.72 | 0.859415 |
Target: 5'- aGCGCG-CAggcGGUGCUC-CCAGG-CCa -3' miRNA: 3'- cUGCGCaGUa--CCACGAGuGGUUCaGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 72022 | 0.71 | 0.881193 |
Target: 5'- gGAUGCGccgCGUGGccugCACCAGGUCCu -3' miRNA: 3'- -CUGCGCa--GUACCacgaGUGGUUCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 103422 | 0.7 | 0.907204 |
Target: 5'- uGCGCGUCGacGUGCgugagcucCGCCAGGUCg -3' miRNA: 3'- cUGCGCAGUacCACGa-------GUGGUUCAGg -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 111333 | 0.7 | 0.907204 |
Target: 5'- aGACGUGUCcc---GCUCGCCAuGUCCu -3' miRNA: 3'- -CUGCGCAGuaccaCGAGUGGUuCAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 109469 | 0.7 | 0.913142 |
Target: 5'- gGGCGCGUC-UGGgaacaUGCgCGCCAGGcgcUCCa -3' miRNA: 3'- -CUGCGCAGuACC-----ACGaGUGGUUC---AGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 134880 | 0.69 | 0.93889 |
Target: 5'- uGCGCGaUCuuguUGGUGC-CGCCGAugaucucGUCCa -3' miRNA: 3'- cUGCGC-AGu---ACCACGaGUGGUU-------CAGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 91206 | 0.69 | 0.939358 |
Target: 5'- gGGCGCGUCGUGG-GCacagUACgGGGaUCCc -3' miRNA: 3'- -CUGCGCAGUACCaCGa---GUGgUUC-AGG- -5' |
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14545 | 3' | -53.5 | NC_003521.1 | + | 152893 | 0.69 | 0.952318 |
Target: 5'- cGCGCaGcUCGUgcacgcGGUGCUC-CCAGGUCUg -3' miRNA: 3'- cUGCG-C-AGUA------CCACGAGuGGUUCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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