miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14545 3' -53.5 NC_003521.1 + 174189 1.12 0.005081
Target:  5'- cGACGCGUCAUGGUGCUCACCAAGUCCu -3'
miRNA:   3'- -CUGCGCAGUACCACGAGUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 93514 0.78 0.518421
Target:  5'- aGCGCGUCGUGGUGgguaUCACCAu-UCCa -3'
miRNA:   3'- cUGCGCAGUACCACg---AGUGGUucAGG- -5'
14545 3' -53.5 NC_003521.1 + 167216 0.77 0.617627
Target:  5'- aGGCGCGcCGcaucuUGGUGUagggCGCCAGGUCCu -3'
miRNA:   3'- -CUGCGCaGU-----ACCACGa---GUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 98995 0.76 0.656967
Target:  5'- aGGCGCGUCGcaggaacUGGUGCUguUGCCGcucgaGGUCCa -3'
miRNA:   3'- -CUGCGCAGU-------ACCACGA--GUGGU-----UCAGG- -5'
14545 3' -53.5 NC_003521.1 + 93119 0.73 0.793054
Target:  5'- cACGgGUCAcaUGGUGCUgGCCGuGUUCg -3'
miRNA:   3'- cUGCgCAGU--ACCACGAgUGGUuCAGG- -5'
14545 3' -53.5 NC_003521.1 + 106717 0.72 0.835841
Target:  5'- aGGCGCG-CA-GGacgGC-CACCAGGUCCu -3'
miRNA:   3'- -CUGCGCaGUaCCa--CGaGUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 214354 0.72 0.859415
Target:  5'- aGCGCG-CAggcGGUGCUC-CCAGG-CCa -3'
miRNA:   3'- cUGCGCaGUa--CCACGAGuGGUUCaGG- -5'
14545 3' -53.5 NC_003521.1 + 126390 0.71 0.881193
Target:  5'- cGCGgGUC-UGGUGC-CGCCAcaGGUCUc -3'
miRNA:   3'- cUGCgCAGuACCACGaGUGGU--UCAGG- -5'
14545 3' -53.5 NC_003521.1 + 72022 0.71 0.881193
Target:  5'- gGAUGCGccgCGUGGccugCACCAGGUCCu -3'
miRNA:   3'- -CUGCGCa--GUACCacgaGUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 15970 0.71 0.888029
Target:  5'- uGGCGCGcUAcGGccUGCUCuacACCGAGUCCa -3'
miRNA:   3'- -CUGCGCaGUaCC--ACGAG---UGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 158556 0.71 0.901038
Target:  5'- uACGUGUCuuucaaaaGGUGCUCACCu--UCCg -3'
miRNA:   3'- cUGCGCAGua------CCACGAGUGGuucAGG- -5'
14545 3' -53.5 NC_003521.1 + 103422 0.7 0.907204
Target:  5'- uGCGCGUCGacGUGCgugagcucCGCCAGGUCg -3'
miRNA:   3'- cUGCGCAGUacCACGa-------GUGGUUCAGg -5'
14545 3' -53.5 NC_003521.1 + 6739 0.7 0.907204
Target:  5'- uGACGCaGcCAgc--GCUCGCCGAGUCCc -3'
miRNA:   3'- -CUGCG-CaGUaccaCGAGUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 111333 0.7 0.907204
Target:  5'- aGACGUGUCcc---GCUCGCCAuGUCCu -3'
miRNA:   3'- -CUGCGCAGuaccaCGAGUGGUuCAGG- -5'
14545 3' -53.5 NC_003521.1 + 109469 0.7 0.913142
Target:  5'- gGGCGCGUC-UGGgaacaUGCgCGCCAGGcgcUCCa -3'
miRNA:   3'- -CUGCGCAGuACC-----ACGaGUGGUUC---AGG- -5'
14545 3' -53.5 NC_003521.1 + 53188 0.7 0.91885
Target:  5'- cGACGcCGUCGgugaacccuccGGUgaGCUCGCCGgggAGUCCg -3'
miRNA:   3'- -CUGC-GCAGUa----------CCA--CGAGUGGU---UCAGG- -5'
14545 3' -53.5 NC_003521.1 + 120084 0.7 0.924325
Target:  5'- aGGCGCGcCAccUGGUGCcccuggUgGCCAcGGUCCa -3'
miRNA:   3'- -CUGCGCaGU--ACCACG------AgUGGU-UCAGG- -5'
14545 3' -53.5 NC_003521.1 + 180108 0.69 0.934579
Target:  5'- gGGCaGCGgCGUGGUGCgacccgCGCCGcccccgGGUCCc -3'
miRNA:   3'- -CUG-CGCaGUACCACGa-----GUGGU------UCAGG- -5'
14545 3' -53.5 NC_003521.1 + 134880 0.69 0.93889
Target:  5'- uGCGCGaUCuuguUGGUGC-CGCCGAugaucucGUCCa -3'
miRNA:   3'- cUGCGC-AGu---ACCACGaGUGGUU-------CAGG- -5'
14545 3' -53.5 NC_003521.1 + 91206 0.69 0.939358
Target:  5'- gGGCGCGUCGUGG-GCacagUACgGGGaUCCc -3'
miRNA:   3'- -CUGCGCAGUACCaCGa---GUGgUUC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.