miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14545 3' -53.5 NC_003521.1 + 5213 0.66 0.989874
Target:  5'- cACGCGguc-GG-GCUCcgcCCGAGUCCg -3'
miRNA:   3'- cUGCGCaguaCCaCGAGu--GGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 6739 0.7 0.907204
Target:  5'- uGACGCaGcCAgc--GCUCGCCGAGUCCc -3'
miRNA:   3'- -CUGCG-CaGUaccaCGAGUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 15667 0.69 0.948225
Target:  5'- aGCGcCGagGUGGUGCgcgACUggGUCCg -3'
miRNA:   3'- cUGC-GCagUACCACGag-UGGuuCAGG- -5'
14545 3' -53.5 NC_003521.1 + 15970 0.71 0.888029
Target:  5'- uGGCGCGcUAcGGccUGCUCuacACCGAGUCCa -3'
miRNA:   3'- -CUGCGCaGUaCC--ACGAG---UGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 16711 0.66 0.991088
Target:  5'- aGACGCG-CGUGaUGCgCGgCGAGUUCg -3'
miRNA:   3'- -CUGCGCaGUACcACGaGUgGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 17443 0.66 0.984931
Target:  5'- -cCGCGUCggGGcgccgcgaugucgcUGCUgACCAAGgCCg -3'
miRNA:   3'- cuGCGCAGuaCC--------------ACGAgUGGUUCaGG- -5'
14545 3' -53.5 NC_003521.1 + 19563 0.66 0.98706
Target:  5'- cGCGUGcUCgGUGGUcUUCACCAccacGGUCCa -3'
miRNA:   3'- cUGCGC-AG-UACCAcGAGUGGU----UCAGG- -5'
14545 3' -53.5 NC_003521.1 + 22363 0.67 0.979668
Target:  5'- uGCGCccacggCGUGGUGCcgGCCAuGUCCu -3'
miRNA:   3'- cUGCGca----GUACCACGagUGGUuCAGG- -5'
14545 3' -53.5 NC_003521.1 + 23587 0.66 0.989874
Target:  5'- gGGCGCGgg--GGUGCUgGCCugcaUCCu -3'
miRNA:   3'- -CUGCGCaguaCCACGAgUGGuuc-AGG- -5'
14545 3' -53.5 NC_003521.1 + 48989 0.66 0.991088
Target:  5'- aGGCGCugaggaaCGUGcUGCgggaCGCCGAGUCCa -3'
miRNA:   3'- -CUGCGca-----GUACcACGa---GUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 53188 0.7 0.91885
Target:  5'- cGACGcCGUCGgugaacccuccGGUgaGCUCGCCGgggAGUCCg -3'
miRNA:   3'- -CUGC-GCAGUa----------CCA--CGAGUGGU---UCAGG- -5'
14545 3' -53.5 NC_003521.1 + 66595 0.68 0.9665
Target:  5'- --aGCGUCAUGaucGCUCGCCAAccCCa -3'
miRNA:   3'- cugCGCAGUACca-CGAGUGGUUcaGG- -5'
14545 3' -53.5 NC_003521.1 + 72022 0.71 0.881193
Target:  5'- gGAUGCGccgCGUGGccugCACCAGGUCCu -3'
miRNA:   3'- -CUGCGCa--GUACCacgaGUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 85471 0.67 0.97522
Target:  5'- gGugGuCGUCGUGGUGCcggugcccgcgccccCGCCGGGaCCc -3'
miRNA:   3'- -CugC-GCAGUACCACGa--------------GUGGUUCaGG- -5'
14545 3' -53.5 NC_003521.1 + 91206 0.69 0.939358
Target:  5'- gGGCGCGUCGUGG-GCacagUACgGGGaUCCc -3'
miRNA:   3'- -CUGCGCAGUACCaCGa---GUGgUUC-AGG- -5'
14545 3' -53.5 NC_003521.1 + 93119 0.73 0.793054
Target:  5'- cACGgGUCAcaUGGUGCUgGCCGuGUUCg -3'
miRNA:   3'- cUGCgCAGU--ACCACGAgUGGUuCAGG- -5'
14545 3' -53.5 NC_003521.1 + 93514 0.78 0.518421
Target:  5'- aGCGCGUCGUGGUGgguaUCACCAu-UCCa -3'
miRNA:   3'- cUGCGCAGUACCACg---AGUGGUucAGG- -5'
14545 3' -53.5 NC_003521.1 + 97622 0.68 0.970671
Target:  5'- cACGuCGUCGUGcucagGCUCgacguucgcggcggcGCCGGGUCCg -3'
miRNA:   3'- cUGC-GCAGUACca---CGAG---------------UGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 98995 0.76 0.656967
Target:  5'- aGGCGCGUCGcaggaacUGGUGCUguUGCCGcucgaGGUCCa -3'
miRNA:   3'- -CUGCGCAGU-------ACCACGA--GUGGU-----UCAGG- -5'
14545 3' -53.5 NC_003521.1 + 99254 0.66 0.98706
Target:  5'- cGCGCGUCGUc--GCgCGCgAGGUCCa -3'
miRNA:   3'- cUGCGCAGUAccaCGaGUGgUUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.