Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14547 | 3' | -52.5 | NC_003521.1 | + | 131863 | 0.66 | 0.99521 |
Target: 5'- aAGGCGgccacGGCCAUcgUGCCGcgCGUgucgGGCa -3' miRNA: 3'- -UCCGC-----CCGGUAa-AUGGCa-GUAa---CUGc -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 71059 | 0.66 | 0.99446 |
Target: 5'- aAGcGCGGcGCCAUggGCCGaCGUUGcUGa -3' miRNA: 3'- -UC-CGCC-CGGUAaaUGGCaGUAACuGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 233184 | 0.66 | 0.99446 |
Target: 5'- uGGCGGccGCCGUU-ACCGUCGgucguucccGACa -3' miRNA: 3'- uCCGCC--CGGUAAaUGGCAGUaa-------CUGc -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 6411 | 0.66 | 0.99521 |
Target: 5'- cGGCgacGGGUC--UUGCCGccucgggacgcUCAUUGACGg -3' miRNA: 3'- uCCG---CCCGGuaAAUGGC-----------AGUAACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 131056 | 0.66 | 0.993617 |
Target: 5'- cGGCGGGCCucuggACgCGg---UGGCGg -3' miRNA: 3'- uCCGCCCGGuaaa-UG-GCaguaACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 229077 | 0.66 | 0.99521 |
Target: 5'- aGGGCGaGUCGggc-CCGUCGaUGACGg -3' miRNA: 3'- -UCCGCcCGGUaaauGGCAGUaACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 121177 | 0.66 | 0.995876 |
Target: 5'- aGGGC-GGCCA---GCgCGUCGUacUGGCGu -3' miRNA: 3'- -UCCGcCCGGUaaaUG-GCAGUA--ACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 240117 | 0.66 | 0.995876 |
Target: 5'- gGGGUGGGCg---UGCgGUCGUcccGGCGg -3' miRNA: 3'- -UCCGCCCGguaaAUGgCAGUAa--CUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 103778 | 0.66 | 0.993252 |
Target: 5'- cGGGCGGuGCCugagucagccGCCGgUUAUUGACc -3' miRNA: 3'- -UCCGCC-CGGuaaa------UGGC-AGUAACUGc -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 75612 | 0.66 | 0.993617 |
Target: 5'- cGGGCGGcGCCAcg-GCUcaGUCGccGACGa -3' miRNA: 3'- -UCCGCC-CGGUaaaUGG--CAGUaaCUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 145875 | 0.66 | 0.992674 |
Target: 5'- cGGGCGGcGCCGacgacgagGCCGcCGgcGGCGg -3' miRNA: 3'- -UCCGCC-CGGUaaa-----UGGCaGUaaCUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 36614 | 0.66 | 0.992674 |
Target: 5'- aGGGCGGGCUg--UGCuCGUCcaugGugGu -3' miRNA: 3'- -UCCGCCCGGuaaAUG-GCAGuaa-CugC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 77046 | 0.66 | 0.992674 |
Target: 5'- uGGUGGcGCCGc-UACCGUUGUUGcCGc -3' miRNA: 3'- uCCGCC-CGGUaaAUGGCAGUAACuGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 184358 | 0.66 | 0.993617 |
Target: 5'- cGGGCGGGCCGUggcgcggcGCC-UCucgGACc -3' miRNA: 3'- -UCCGCCCGGUAaa------UGGcAGuaaCUGc -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 129664 | 0.66 | 0.992674 |
Target: 5'- gGGGCGGccgcGCUAUgcggACCGUCccgUGGCc -3' miRNA: 3'- -UCCGCC----CGGUAaa--UGGCAGua-ACUGc -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 39890 | 0.66 | 0.995876 |
Target: 5'- gGGGUGGGCg---UGCgGUCGUcccGGCGg -3' miRNA: 3'- -UCCGCCCGguaaAUGgCAGUAa--CUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 98975 | 0.66 | 0.992674 |
Target: 5'- gAGGCGGuGCCGggaGCCGUa---GGCGc -3' miRNA: 3'- -UCCGCC-CGGUaaaUGGCAguaaCUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 175410 | 0.66 | 0.99446 |
Target: 5'- cAGGUGGGUCAgggaggcGCgCGUCugagUGGCGu -3' miRNA: 3'- -UCCGCCCGGUaaa----UG-GCAGua--ACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 145659 | 0.66 | 0.994994 |
Target: 5'- uGGUGGGCCcggccggccgacuccUUGCCGUCGgc-GCGg -3' miRNA: 3'- uCCGCCCGGua-------------AAUGGCAGUaacUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 166955 | 0.66 | 0.99446 |
Target: 5'- cGGGCGGGgggaggcuCUcgUcGCUGUgGUUGACGu -3' miRNA: 3'- -UCCGCCC--------GGuaAaUGGCAgUAACUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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