Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14547 | 3' | -52.5 | NC_003521.1 | + | 176788 | 1.09 | 0.010303 |
Target: 5'- cAGGCGGGCCAUUUACCGUCAUUGACGu -3' miRNA: 3'- -UCCGCCCGGUAAAUGGCAGUAACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 176952 | 0.83 | 0.343095 |
Target: 5'- -aGUGGGCCAUUUACCGaUAUUGACGu -3' miRNA: 3'- ucCGCCCGGUAAAUGGCaGUAACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 63998 | 0.8 | 0.470629 |
Target: 5'- -aGUGGGCCAUUUACCGUUcaccacgccccuAUUGACGu -3' miRNA: 3'- ucCGCCCGGUAAAUGGCAG------------UAACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 27471 | 0.76 | 0.699108 |
Target: 5'- cAGGCuGGCCAggu-CCGUCAUgUGGCGg -3' miRNA: 3'- -UCCGcCCGGUaaauGGCAGUA-ACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 188660 | 0.74 | 0.794704 |
Target: 5'- cGGGCGGaCCcgcggUACCGUCGcUGACGg -3' miRNA: 3'- -UCCGCCcGGuaa--AUGGCAGUaACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 127443 | 0.73 | 0.845699 |
Target: 5'- cGGCucgucGGCCAgcugGCCGUUGUUGACGc -3' miRNA: 3'- uCCGc----CCGGUaaa-UGGCAGUAACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 149397 | 0.72 | 0.896451 |
Target: 5'- uGGGCuucguGGCCGUg-GCCGUCAcgGACGa -3' miRNA: 3'- -UCCGc----CCGGUAaaUGGCAGUaaCUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 221801 | 0.71 | 0.91372 |
Target: 5'- cGGCGGGCaugggcuCCGUCGgcggGGCGg -3' miRNA: 3'- uCCGCCCGguaaau-GGCAGUaa--CUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 240632 | 0.71 | 0.920561 |
Target: 5'- cGGCGGGCCG---GCCgGUCg--GACGu -3' miRNA: 3'- uCCGCCCGGUaaaUGG-CAGuaaCUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 83 | 0.71 | 0.920561 |
Target: 5'- cGGCGGGCCG---GCCgGUCg--GACGu -3' miRNA: 3'- uCCGCCCGGUaaaUGG-CAGuaaCUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 200311 | 0.71 | 0.920561 |
Target: 5'- cGGCGGGCCG---GCCgGUCg--GACGu -3' miRNA: 3'- uCCGCCCGGUaaaUGG-CAGuaaCUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 164788 | 0.7 | 0.936181 |
Target: 5'- cGGCGGGCaCGg--GUCGUCGggGACGa -3' miRNA: 3'- uCCGCCCG-GUaaaUGGCAGUaaCUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 227245 | 0.7 | 0.936181 |
Target: 5'- cAGGgGGGCCAaucggACCGUCGgaGAUu -3' miRNA: 3'- -UCCgCCCGGUaaa--UGGCAGUaaCUGc -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 224019 | 0.7 | 0.936181 |
Target: 5'- cGGCGGGCCcg--GCgGUCgg-GGCGg -3' miRNA: 3'- uCCGCCCGGuaaaUGgCAGuaaCUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 165495 | 0.7 | 0.94969 |
Target: 5'- -cGCGGGCC----GCCGUCAgcaucugggUGACGc -3' miRNA: 3'- ucCGCCCGGuaaaUGGCAGUa--------ACUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 146171 | 0.7 | 0.953733 |
Target: 5'- gAGGUGGGCCGcgagUUGCUGgcCGgcgGACGg -3' miRNA: 3'- -UCCGCCCGGUa---AAUGGCa-GUaa-CUGC- -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 196808 | 0.69 | 0.961147 |
Target: 5'- uAGGUGGGCgAgggcagGCCGUgGUUGAg- -3' miRNA: 3'- -UCCGCCCGgUaaa---UGGCAgUAACUgc -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 82275 | 0.69 | 0.964527 |
Target: 5'- cAGGCGGGUaCGUUaAUCGUCAUaGAUc -3' miRNA: 3'- -UCCGCCCG-GUAAaUGGCAGUAaCUGc -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 179997 | 0.69 | 0.964527 |
Target: 5'- -cGCGGGCC----GCCGUCG-UGGCa -3' miRNA: 3'- ucCGCCCGGuaaaUGGCAGUaACUGc -5' |
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14547 | 3' | -52.5 | NC_003521.1 | + | 30581 | 0.69 | 0.964527 |
Target: 5'- aGGGCaGGuCCAagUGCCGUCcgcgcUGACGg -3' miRNA: 3'- -UCCGcCC-GGUaaAUGGCAGua---ACUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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