miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 3' -52.5 NC_003521.1 + 83 0.71 0.920561
Target:  5'- cGGCGGGCCG---GCCgGUCg--GACGu -3'
miRNA:   3'- uCCGCCCGGUaaaUGG-CAGuaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 6411 0.66 0.99521
Target:  5'- cGGCgacGGGUC--UUGCCGccucgggacgcUCAUUGACGg -3'
miRNA:   3'- uCCG---CCCGGuaAAUGGC-----------AGUAACUGC- -5'
14547 3' -52.5 NC_003521.1 + 11734 0.67 0.986183
Target:  5'- cGGCGaGUCG---GCCGUCAUcGACGg -3'
miRNA:   3'- uCCGCcCGGUaaaUGGCAGUAaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 17019 0.66 0.99521
Target:  5'- cGGCGGcGCaggc--CCGUCGUcUGGCGg -3'
miRNA:   3'- uCCGCC-CGguaaauGGCAGUA-ACUGC- -5'
14547 3' -52.5 NC_003521.1 + 19126 0.66 0.995876
Target:  5'- uGGCGGGCCGccggugUACCaGUCGgagUGcCu -3'
miRNA:   3'- uCCGCCCGGUaa----AUGG-CAGUa--ACuGc -5'
14547 3' -52.5 NC_003521.1 + 23643 0.66 0.99521
Target:  5'- uGGGCGG--CAUggACCGUCGUcguUGGCa -3'
miRNA:   3'- -UCCGCCcgGUAaaUGGCAGUA---ACUGc -5'
14547 3' -52.5 NC_003521.1 + 27471 0.76 0.699108
Target:  5'- cAGGCuGGCCAggu-CCGUCAUgUGGCGg -3'
miRNA:   3'- -UCCGcCCGGUaaauGGCAGUA-ACUGC- -5'
14547 3' -52.5 NC_003521.1 + 30581 0.69 0.964527
Target:  5'- aGGGCaGGuCCAagUGCCGUCcgcgcUGACGg -3'
miRNA:   3'- -UCCGcCC-GGUaaAUGGCAGua---ACUGC- -5'
14547 3' -52.5 NC_003521.1 + 34289 0.67 0.987745
Target:  5'- gGGGCGGGCCAcg-GgCGUCAc----- -3'
miRNA:   3'- -UCCGCCCGGUaaaUgGCAGUaacugc -5'
14547 3' -52.5 NC_003521.1 + 36614 0.66 0.992674
Target:  5'- aGGGCGGGCUg--UGCuCGUCcaugGugGu -3'
miRNA:   3'- -UCCGCCCGGuaaAUG-GCAGuaa-CugC- -5'
14547 3' -52.5 NC_003521.1 + 39890 0.66 0.995876
Target:  5'- gGGGUGGGCg---UGCgGUCGUcccGGCGg -3'
miRNA:   3'- -UCCGCCCGguaaAUGgCAGUAa--CUGC- -5'
14547 3' -52.5 NC_003521.1 + 53646 0.68 0.980575
Target:  5'- cAGGCGGGCCGUcu-CCGcaCGUUG-Cu -3'
miRNA:   3'- -UCCGCCCGGUAaauGGCa-GUAACuGc -5'
14547 3' -52.5 NC_003521.1 + 62500 0.66 0.99521
Target:  5'- --cCGGGCCcgcUGCUGUCcUUGACGu -3'
miRNA:   3'- uccGCCCGGuaaAUGGCAGuAACUGC- -5'
14547 3' -52.5 NC_003521.1 + 63998 0.8 0.470629
Target:  5'- -aGUGGGCCAUUUACCGUUcaccacgccccuAUUGACGu -3'
miRNA:   3'- ucCGCCCGGUAAAUGGCAG------------UAACUGC- -5'
14547 3' -52.5 NC_003521.1 + 71059 0.66 0.99446
Target:  5'- aAGcGCGGcGCCAUggGCCGaCGUUGcUGa -3'
miRNA:   3'- -UC-CGCC-CGGUAaaUGGCaGUAACuGC- -5'
14547 3' -52.5 NC_003521.1 + 75612 0.66 0.993617
Target:  5'- cGGGCGGcGCCAcg-GCUcaGUCGccGACGa -3'
miRNA:   3'- -UCCGCC-CGGUaaaUGG--CAGUaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 77046 0.66 0.992674
Target:  5'- uGGUGGcGCCGc-UACCGUUGUUGcCGc -3'
miRNA:   3'- uCCGCC-CGGUaaAUGGCAGUAACuGC- -5'
14547 3' -52.5 NC_003521.1 + 78997 0.68 0.980575
Target:  5'- cGGGCacGGGCCGcgUACCGUagcCGUaGAUGg -3'
miRNA:   3'- -UCCG--CCCGGUaaAUGGCA---GUAaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 82275 0.69 0.964527
Target:  5'- cAGGCGGGUaCGUUaAUCGUCAUaGAUc -3'
miRNA:   3'- -UCCGCCCG-GUAAaUGGCAGUAaCUGc -5'
14547 3' -52.5 NC_003521.1 + 82773 0.69 0.970658
Target:  5'- cGGCGGGCCGUggaGCa--CAggGACGa -3'
miRNA:   3'- uCCGCCCGGUAaa-UGgcaGUaaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.