miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 3' -52.5 NC_003521.1 + 192325 0.68 0.980575
Target:  5'- cGGCGGcaCCGUgggUACCGUCA--GAUGg -3'
miRNA:   3'- uCCGCCc-GGUAa--AUGGCAGUaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 30581 0.69 0.964527
Target:  5'- aGGGCaGGuCCAagUGCCGUCcgcgcUGACGg -3'
miRNA:   3'- -UCCGcCC-GGUaaAUGGCAGua---ACUGC- -5'
14547 3' -52.5 NC_003521.1 + 179997 0.69 0.964527
Target:  5'- -cGCGGGCC----GCCGUCG-UGGCa -3'
miRNA:   3'- ucCGCCCGGuaaaUGGCAGUaACUGc -5'
14547 3' -52.5 NC_003521.1 + 82773 0.69 0.970658
Target:  5'- cGGCGGGCCGUggaGCa--CAggGACGa -3'
miRNA:   3'- uCCGCCCGGUAaa-UGgcaGUaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 169003 0.69 0.970658
Target:  5'- gAGGCGGGCgAcgggGCCGgCAcgaucUUGACGu -3'
miRNA:   3'- -UCCGCCCGgUaaa-UGGCaGU-----AACUGC- -5'
14547 3' -52.5 NC_003521.1 + 87872 0.68 0.975989
Target:  5'- cAGGCGcuGGCCAg--GCCGU---UGGCGa -3'
miRNA:   3'- -UCCGC--CCGGUaaaUGGCAguaACUGC- -5'
14547 3' -52.5 NC_003521.1 + 181220 0.68 0.975989
Target:  5'- -uGCGauGGCCGaucGCCGUCGUUGACc -3'
miRNA:   3'- ucCGC--CCGGUaaaUGGCAGUAACUGc -5'
14547 3' -52.5 NC_003521.1 + 168422 0.68 0.978372
Target:  5'- aGGGCGGGCgGcaggGCCG-CGgcGGCGg -3'
miRNA:   3'- -UCCGCCCGgUaaa-UGGCaGUaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 78997 0.68 0.980575
Target:  5'- cGGGCacGGGCCGcgUACCGUagcCGUaGAUGg -3'
miRNA:   3'- -UCCG--CCCGGUaaAUGGCA---GUAaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 146171 0.7 0.953733
Target:  5'- gAGGUGGGCCGcgagUUGCUGgcCGgcgGACGg -3'
miRNA:   3'- -UCCGCCCGGUa---AAUGGCa-GUaa-CUGC- -5'
14547 3' -52.5 NC_003521.1 + 224019 0.7 0.936181
Target:  5'- cGGCGGGCCcg--GCgGUCgg-GGCGg -3'
miRNA:   3'- uCCGCCCGGuaaaUGgCAGuaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 164788 0.7 0.936181
Target:  5'- cGGCGGGCaCGg--GUCGUCGggGACGa -3'
miRNA:   3'- uCCGCCCG-GUaaaUGGCAGUaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 176952 0.83 0.343095
Target:  5'- -aGUGGGCCAUUUACCGaUAUUGACGu -3'
miRNA:   3'- ucCGCCCGGUAAAUGGCaGUAACUGC- -5'
14547 3' -52.5 NC_003521.1 + 27471 0.76 0.699108
Target:  5'- cAGGCuGGCCAggu-CCGUCAUgUGGCGg -3'
miRNA:   3'- -UCCGcCCGGUaaauGGCAGUA-ACUGC- -5'
14547 3' -52.5 NC_003521.1 + 188660 0.74 0.794704
Target:  5'- cGGGCGGaCCcgcggUACCGUCGcUGACGg -3'
miRNA:   3'- -UCCGCCcGGuaa--AUGGCAGUaACUGC- -5'
14547 3' -52.5 NC_003521.1 + 127443 0.73 0.845699
Target:  5'- cGGCucgucGGCCAgcugGCCGUUGUUGACGc -3'
miRNA:   3'- uCCGc----CCGGUaaa-UGGCAGUAACUGC- -5'
14547 3' -52.5 NC_003521.1 + 149397 0.72 0.896451
Target:  5'- uGGGCuucguGGCCGUg-GCCGUCAcgGACGa -3'
miRNA:   3'- -UCCGc----CCGGUAaaUGGCAGUaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 221801 0.71 0.91372
Target:  5'- cGGCGGGCaugggcuCCGUCGgcggGGCGg -3'
miRNA:   3'- uCCGCCCGguaaau-GGCAGUaa--CUGC- -5'
14547 3' -52.5 NC_003521.1 + 200311 0.71 0.920561
Target:  5'- cGGCGGGCCG---GCCgGUCg--GACGu -3'
miRNA:   3'- uCCGCCCGGUaaaUGG-CAGuaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 227245 0.7 0.936181
Target:  5'- cAGGgGGGCCAaucggACCGUCGgaGAUu -3'
miRNA:   3'- -UCCgCCCGGUaaa--UGGCAGUaaCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.