miRNA display CGI


Results 41 - 60 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 181369 0.68 0.967937
Target:  5'- uGGuguUGUCguagaccucgagcUCGCUGccggcggcgGCGCCGCUGUCGc -3'
miRNA:   3'- -CCu--ACAGa------------AGCGAC---------UGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 74108 0.68 0.966116
Target:  5'- aGGAUGauagCUg-GCUGugGCCGCUGgUCa -3'
miRNA:   3'- -CCUACa---GAagCGACugUGGCGGC-AGc -5'
14589 5' -54.2 NC_003521.1 + 84725 0.68 0.959526
Target:  5'- aGGAga----CGCgGGCACUGCCGUCGu -3'
miRNA:   3'- -CCUacagaaGCGaCUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 221767 0.68 0.95592
Target:  5'- ---cGUCUgCGCc-GCGCCGCCGUCc -3'
miRNA:   3'- ccuaCAGAaGCGacUGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 121871 0.68 0.95592
Target:  5'- gGGAcUGUCUcgggCGCUGGCccugacgggacGCCGCCGcCc -3'
miRNA:   3'- -CCU-ACAGAa---GCGACUG-----------UGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 196141 0.68 0.959526
Target:  5'- ---cGUCcgcUGCUGGCGCUGCCGUUc -3'
miRNA:   3'- ccuaCAGaa-GCGACUGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 102189 0.68 0.95592
Target:  5'- gGGGUGgcgacUUUCGCcGAC-CCGCUGUCc -3'
miRNA:   3'- -CCUACa----GAAGCGaCUGuGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 76982 0.68 0.95592
Target:  5'- aGGAaagccacggCUUCGgacgUGACGCCGCCGUCc -3'
miRNA:   3'- -CCUaca------GAAGCg---ACUGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 74747 0.68 0.95592
Target:  5'- ---gGUCUccCGaCUGGCGUCGCCGUCGa -3'
miRNA:   3'- ccuaCAGAa-GC-GACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 143518 0.67 0.974525
Target:  5'- uGGAUGUCgggC-CUGauccgcacgcGCGCCGCCGgCGa -3'
miRNA:   3'- -CCUACAGaa-GcGAC----------UGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 214733 0.67 0.974525
Target:  5'- --cUGUCUggGCUucggucaGCGCCGCCGUCu -3'
miRNA:   3'- ccuACAGAagCGAc------UGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 226370 0.67 0.974525
Target:  5'- gGGAg--CggCgGCUGACGCCGCCG-Ca -3'
miRNA:   3'- -CCUacaGaaG-CGACUGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 223769 0.67 0.976957
Target:  5'- ---cGUCcUCGCUGuCGgCGCCGUUa -3'
miRNA:   3'- ccuaCAGaAGCGACuGUgGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 220944 0.67 0.976957
Target:  5'- aGGA--UCagCGCcGACGCgGCCGUCa -3'
miRNA:   3'- -CCUacAGaaGCGaCUGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 232392 0.67 0.979214
Target:  5'- ---cGUCUcgCGCUGGCugCGCCuG-CGg -3'
miRNA:   3'- ccuaCAGAa-GCGACUGugGCGG-CaGC- -5'
14589 5' -54.2 NC_003521.1 + 35513 0.67 0.979214
Target:  5'- aGGGUGUCgaggugUCGaaaCUGGucCGCCauGCCGUCGu -3'
miRNA:   3'- -CCUACAGa-----AGC---GACU--GUGG--CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 127220 0.67 0.974525
Target:  5'- ---cGUCgUCGCUGGCGCgGUgGUCc -3'
miRNA:   3'- ccuaCAGaAGCGACUGUGgCGgCAGc -5'
14589 5' -54.2 NC_003521.1 + 199361 0.67 0.979214
Target:  5'- gGGAUGUCUUCGCgUGGuccgaggaguaUAgUGuuGUCGu -3'
miRNA:   3'- -CCUACAGAAGCG-ACU-----------GUgGCggCAGC- -5'
14589 5' -54.2 NC_003521.1 + 210881 0.67 0.979214
Target:  5'- aGGGUGUacgUCGCcucgGugGCCGUCGcCa -3'
miRNA:   3'- -CCUACAga-AGCGa---CugUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 3625 0.67 0.980693
Target:  5'- aGGAUGUUgUUGUUcucuagcgugccacGGcCGCCGCCGUCu -3'
miRNA:   3'- -CCUACAGaAGCGA--------------CU-GUGGCGGCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.