miRNA display CGI


Results 1 - 20 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 3' -59.5 NC_003521.1 + 147746 0.66 0.858728
Target:  5'- gCCga-AGCCGuaGCaCAGGCCCaUGGCCa -3'
miRNA:   3'- -GGuagUUGGUc-CG-GUCCGGGcACCGG- -5'
14591 3' -59.5 NC_003521.1 + 167028 0.66 0.851376
Target:  5'- gCCggCGACgAugacGGCCA-GUCCGUGGUCa -3'
miRNA:   3'- -GGuaGUUGgU----CCGGUcCGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 17130 0.66 0.865897
Target:  5'- gUCGUCGAUCcuGCCGGcgcgcuucGCCCGacccucccUGGCCa -3'
miRNA:   3'- -GGUAGUUGGucCGGUC--------CGGGC--------ACCGG- -5'
14591 3' -59.5 NC_003521.1 + 86330 0.66 0.858728
Target:  5'- aCGUCAGCCGGGUggugAGGCC-GUGcagcgaGCCg -3'
miRNA:   3'- gGUAGUUGGUCCGg---UCCGGgCAC------CGG- -5'
14591 3' -59.5 NC_003521.1 + 52582 0.66 0.851376
Target:  5'- aCGUC-GCgCGGGCagcugguGGCCCGaaaGGCCg -3'
miRNA:   3'- gGUAGuUG-GUCCGgu-----CCGGGCa--CCGG- -5'
14591 3' -59.5 NC_003521.1 + 26107 0.66 0.851376
Target:  5'- -aGUCGGCCAGG-UAGaGUUCGgcgGGCCg -3'
miRNA:   3'- ggUAGUUGGUCCgGUC-CGGGCa--CCGG- -5'
14591 3' -59.5 NC_003521.1 + 63035 0.66 0.858728
Target:  5'- cCCAcCAGCggaCAGGCCccgucGGCCC-UGGCg -3'
miRNA:   3'- -GGUaGUUG---GUCCGGu----CCGGGcACCGg -5'
14591 3' -59.5 NC_003521.1 + 78977 0.66 0.858728
Target:  5'- -gAUCGACacacacugCAGGUCGGGCaCG-GGCCg -3'
miRNA:   3'- ggUAGUUG--------GUCCGGUCCGgGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 71270 0.66 0.865897
Target:  5'- aCAUCGGCgGaGGCgGGGgCCGcGGCa -3'
miRNA:   3'- gGUAGUUGgU-CCGgUCCgGGCaCCGg -5'
14591 3' -59.5 NC_003521.1 + 87780 0.66 0.872879
Target:  5'- gCCAg-GGCCAGGUgcugAGGCCCGUaGCg -3'
miRNA:   3'- -GGUagUUGGUCCGg---UCCGGGCAcCGg -5'
14591 3' -59.5 NC_003521.1 + 226080 0.66 0.851376
Target:  5'- ---cCGGCCGcGGCC-GGCCCGUcacGCCc -3'
miRNA:   3'- gguaGUUGGU-CCGGuCCGGGCAc--CGG- -5'
14591 3' -59.5 NC_003521.1 + 140611 0.66 0.865897
Target:  5'- uCCGcuUCGAggAGGCCguaaauauGGcGCUCGUGGCCu -3'
miRNA:   3'- -GGU--AGUUggUCCGG--------UC-CGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 203878 0.66 0.851376
Target:  5'- gCGaCGACCAGcGUCGGGCCCaugacGGCa -3'
miRNA:   3'- gGUaGUUGGUC-CGGUCCGGGca---CCGg -5'
14591 3' -59.5 NC_003521.1 + 213430 0.66 0.886261
Target:  5'- aCAaCAACCAcgagauccccguGGCCuGGCCCcccGGCUg -3'
miRNA:   3'- gGUaGUUGGU------------CCGGuCCGGGca-CCGG- -5'
14591 3' -59.5 NC_003521.1 + 127423 0.66 0.851376
Target:  5'- gCGUUcACgUAGGCCGccagcGGCUCGUcGGCCa -3'
miRNA:   3'- gGUAGuUG-GUCCGGU-----CCGGGCA-CCGG- -5'
14591 3' -59.5 NC_003521.1 + 172789 0.66 0.858728
Target:  5'- gCCGcgGACCAcGCC--GCCCGUGGCg -3'
miRNA:   3'- -GGUagUUGGUcCGGucCGGGCACCGg -5'
14591 3' -59.5 NC_003521.1 + 153432 0.66 0.865897
Target:  5'- gUCAgcagCAGCCggucgcgcucguAGGCCAgcGGCUCGcaGGCCa -3'
miRNA:   3'- -GGUa---GUUGG------------UCCGGU--CCGGGCa-CCGG- -5'
14591 3' -59.5 NC_003521.1 + 216872 0.66 0.858728
Target:  5'- cCCGUgGAgCGGGacauCCAGGCCauccaGGCCa -3'
miRNA:   3'- -GGUAgUUgGUCC----GGUCCGGgca--CCGG- -5'
14591 3' -59.5 NC_003521.1 + 105798 0.66 0.865897
Target:  5'- aCCGU-GACgCAGGCCacGGuGCCCGgcaGCCa -3'
miRNA:   3'- -GGUAgUUG-GUCCGG--UC-CGGGCac-CGG- -5'
14591 3' -59.5 NC_003521.1 + 151315 0.66 0.858728
Target:  5'- gCAaggCGGCCAGGCgGGuggcGUCCGagGGCCu -3'
miRNA:   3'- gGUa--GUUGGUCCGgUC----CGGGCa-CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.