miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 3' -59.5 NC_003521.1 + 1033 0.68 0.769158
Target:  5'- gCCGcgCAGCCAgauGGCCGGcGUCgG-GGCCa -3'
miRNA:   3'- -GGUa-GUUGGU---CCGGUC-CGGgCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 1790 0.67 0.836148
Target:  5'- gCCG-CGACCAGGUCcggGGGUCCGgcgaaugcaGCCa -3'
miRNA:   3'- -GGUaGUUGGUCCGG---UCCGGGCac-------CGG- -5'
14591 3' -59.5 NC_003521.1 + 1852 0.67 0.836148
Target:  5'- aCA--GACCGGGaCgGGGCCCG-GcGCCu -3'
miRNA:   3'- gGUagUUGGUCC-GgUCCGGGCaC-CGG- -5'
14591 3' -59.5 NC_003521.1 + 7345 0.71 0.625031
Target:  5'- aCCAgau-CCAGGCCAGGCUgaaaCGcagcuccauguucuUGGCCa -3'
miRNA:   3'- -GGUaguuGGUCCGGUCCGG----GC--------------ACCGG- -5'
14591 3' -59.5 NC_003521.1 + 7407 0.66 0.858728
Target:  5'- gCCGUCGgaGCCaccgGGGCCAGGagCCGagacGGCa -3'
miRNA:   3'- -GGUAGU--UGG----UCCGGUCCg-GGCa---CCGg -5'
14591 3' -59.5 NC_003521.1 + 11927 0.67 0.803759
Target:  5'- uCCccCAGCCGGGCCcGGCUgGUGcuCCu -3'
miRNA:   3'- -GGuaGUUGGUCCGGuCCGGgCACc-GG- -5'
14591 3' -59.5 NC_003521.1 + 13181 0.67 0.836148
Target:  5'- -gGUCcuGACCAGGCguGccGCUCG-GGCCg -3'
miRNA:   3'- ggUAG--UUGGUCCGguC--CGGGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 13884 0.66 0.886261
Target:  5'- gCCAUgGauuucGCCGGG--GGGCCCGgcgcggagggGGCCg -3'
miRNA:   3'- -GGUAgU-----UGGUCCggUCCGGGCa---------CCGG- -5'
14591 3' -59.5 NC_003521.1 + 14348 0.67 0.803759
Target:  5'- aCCcgCGACCAGuacCUGGuGCUgGUGGCCc -3'
miRNA:   3'- -GGuaGUUGGUCc--GGUC-CGGgCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 14754 0.71 0.608622
Target:  5'- gCCGgccgCGGCCGGGgCGcGCCuuCGUGGCCg -3'
miRNA:   3'- -GGUa---GUUGGUCCgGUcCGG--GCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 17008 0.66 0.879668
Target:  5'- gCCcgCGgugGCgGcGGCgCAGGCCCGUcgucuggcGGCCc -3'
miRNA:   3'- -GGuaGU---UGgU-CCG-GUCCGGGCA--------CCGG- -5'
14591 3' -59.5 NC_003521.1 + 17130 0.66 0.865897
Target:  5'- gUCGUCGAUCcuGCCGGcgcgcuucGCCCGacccucccUGGCCa -3'
miRNA:   3'- -GGUAGUUGGucCGGUC--------CGGGC--------ACCGG- -5'
14591 3' -59.5 NC_003521.1 + 17742 0.75 0.401153
Target:  5'- cCCGUCGGCCgAGGCCGGGgaaC-UGGCCg -3'
miRNA:   3'- -GGUAGUUGG-UCCGGUCCgg-GcACCGG- -5'
14591 3' -59.5 NC_003521.1 + 19691 0.69 0.72352
Target:  5'- -aAUCugaCAGGCCAGGCCgGgacaagGGCg -3'
miRNA:   3'- ggUAGuugGUCCGGUCCGGgCa-----CCGg -5'
14591 3' -59.5 NC_003521.1 + 23854 0.69 0.736517
Target:  5'- cCCAUCAACCcGcGCCgauugcugauuccuuGGGUCCGgGGCa -3'
miRNA:   3'- -GGUAGUUGGuC-CGG---------------UCCGGGCaCCGg -5'
14591 3' -59.5 NC_003521.1 + 24389 0.68 0.769159
Target:  5'- cUCAaaaAGCCGGcGCCGGGCCCGcGGa- -3'
miRNA:   3'- -GGUag-UUGGUC-CGGUCCGGGCaCCgg -5'
14591 3' -59.5 NC_003521.1 + 26107 0.66 0.851376
Target:  5'- -aGUCGGCCAGG-UAGaGUUCGgcgGGCCg -3'
miRNA:   3'- ggUAGUUGGUCCgGUC-CGGGCa--CCGG- -5'
14591 3' -59.5 NC_003521.1 + 26284 0.72 0.551263
Target:  5'- aCCgGUCu-CgAGGCCAGGCCag-GGCCa -3'
miRNA:   3'- -GG-UAGuuGgUCCGGUCCGGgcaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 26663 0.66 0.858728
Target:  5'- cCCGUCGACCAaGCCA--UCCGcGGCUc -3'
miRNA:   3'- -GGUAGUUGGUcCGGUccGGGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 27016 0.67 0.836148
Target:  5'- gCAUCGaaACCgAGGCucCAGGCgCGgcgcaggGGCCg -3'
miRNA:   3'- gGUAGU--UGG-UCCG--GUCCGgGCa------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.