miRNA display CGI


Results 1 - 20 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 3' -59.5 NC_003521.1 + 45296 0.72 0.532481
Target:  5'- gCCGcUgGGCCAGgaGCCGGaGCCCGagcUGGCCg -3'
miRNA:   3'- -GGU-AgUUGGUC--CGGUC-CGGGC---ACCGG- -5'
14591 3' -59.5 NC_003521.1 + 148875 0.74 0.460026
Target:  5'- aCGcCAGCCuGGCCucGgCCGUGGCCg -3'
miRNA:   3'- gGUaGUUGGuCCGGucCgGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 142382 0.73 0.477676
Target:  5'- uCCAacgUAGCCcaggAGGCCGcGGCCC-UGGCCg -3'
miRNA:   3'- -GGUa--GUUGG----UCCGGU-CCGGGcACCGG- -5'
14591 3' -59.5 NC_003521.1 + 131447 0.73 0.485728
Target:  5'- gUCAUCAACaugaAGGCCGcgcucucGGCCuCGUcGGCCu -3'
miRNA:   3'- -GGUAGUUGg---UCCGGU-------CCGG-GCA-CCGG- -5'
14591 3' -59.5 NC_003521.1 + 137005 0.73 0.504758
Target:  5'- gCAUCAGCgCGagcuGGCCgAGGCCCG-GGCg -3'
miRNA:   3'- gGUAGUUG-GU----CCGG-UCCGGGCaCCGg -5'
14591 3' -59.5 NC_003521.1 + 27370 0.73 0.513933
Target:  5'- aCCAggcucCAGCCgggGGGCCAGGCCacggggaucuCGUGGUUg -3'
miRNA:   3'- -GGUa----GUUGG---UCCGGUCCGG----------GCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 204123 0.73 0.513933
Target:  5'- uCCAcCuGCuCGGGCCAGGCgCCGgagcccGGCCu -3'
miRNA:   3'- -GGUaGuUG-GUCCGGUCCG-GGCa-----CCGG- -5'
14591 3' -59.5 NC_003521.1 + 153048 0.72 0.522248
Target:  5'- aCCGaCGAggcggcccCCAGGCCuccuccgccgccgGGGCCCG-GGCCg -3'
miRNA:   3'- -GGUaGUU--------GGUCCGG-------------UCCGGGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 229068 0.72 0.531547
Target:  5'- gCCGUCc-CCAGGgcgagUCGGGCCCGUcgaugacGGCCg -3'
miRNA:   3'- -GGUAGuuGGUCC-----GGUCCGGGCA-------CCGG- -5'
14591 3' -59.5 NC_003521.1 + 218352 0.74 0.451332
Target:  5'- uUCAUC-ACCAGG-CAGGCCacCGUGaGCCa -3'
miRNA:   3'- -GGUAGuUGGUCCgGUCCGG--GCAC-CGG- -5'
14591 3' -59.5 NC_003521.1 + 165770 0.74 0.425803
Target:  5'- cCCAUCAucguGCCgaAGGCCA-GCCCGcUGGCg -3'
miRNA:   3'- -GGUAGU----UGG--UCCGGUcCGGGC-ACCGg -5'
14591 3' -59.5 NC_003521.1 + 62781 0.74 0.425803
Target:  5'- cCCAcCAGCCugacGGGCCcGGCgucuuugacgaCCGUGGCCg -3'
miRNA:   3'- -GGUaGUUGG----UCCGGuCCG-----------GGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 129811 0.83 0.141689
Target:  5'- gCGUCAaguugguGCUGGGCCgccugcugcugGGGCCCGUGGCCg -3'
miRNA:   3'- gGUAGU-------UGGUCCGG-----------UCCGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 215584 0.78 0.252306
Target:  5'- gCCGUCAACCGGGCuCGGaGCCUGggagggagauacacGGCCg -3'
miRNA:   3'- -GGUAGUUGGUCCG-GUC-CGGGCa-------------CCGG- -5'
14591 3' -59.5 NC_003521.1 + 220125 0.78 0.263939
Target:  5'- gCGUCcGCCcagaaAGGCCAGGCCCGUGaaggugaugaacagcGCCa -3'
miRNA:   3'- gGUAGuUGG-----UCCGGUCCGGGCAC---------------CGG- -5'
14591 3' -59.5 NC_003521.1 + 167825 0.78 0.279708
Target:  5'- -uGUCAGCCAgagcaggagcGGCCAGGCCCcccgcGGCCg -3'
miRNA:   3'- ggUAGUUGGU----------CCGGUCCGGGca---CCGG- -5'
14591 3' -59.5 NC_003521.1 + 151648 0.77 0.312119
Target:  5'- aCGUcCAGCaGGGCCAGGCCCacGGCCc -3'
miRNA:   3'- gGUA-GUUGgUCCGGUCCGGGcaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 17742 0.75 0.401153
Target:  5'- cCCGUCGGCCgAGGCCGGGgaaC-UGGCCg -3'
miRNA:   3'- -GGUAGUUGG-UCCGGUCCgg-GcACCGG- -5'
14591 3' -59.5 NC_003521.1 + 109423 0.74 0.417486
Target:  5'- gCAUCAugGCCAGGauagaCAGGgCCGUGGgCa -3'
miRNA:   3'- gGUAGU--UGGUCCg----GUCCgGGCACCgG- -5'
14591 3' -59.5 NC_003521.1 + 43829 0.74 0.417486
Target:  5'- -gGUCAGCCGccgccGGCCgcGGGCCCGUcacaggcgccccGGCCg -3'
miRNA:   3'- ggUAGUUGGU-----CCGG--UCCGGGCA------------CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.