miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 3' -59.5 NC_003521.1 + 212464 1.12 0.001586
Target:  5'- gCCAUCAACCAGGCCAGGCCCGUGGCCc -3'
miRNA:   3'- -GGUAGUUGGUCCGGUCCGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 129811 0.83 0.141689
Target:  5'- gCGUCAaguugguGCUGGGCCgccugcugcugGGGCCCGUGGCCg -3'
miRNA:   3'- gGUAGU-------UGGUCCGG-----------UCCGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 215584 0.78 0.252306
Target:  5'- gCCGUCAACCGGGCuCGGaGCCUGggagggagauacacGGCCg -3'
miRNA:   3'- -GGUAGUUGGUCCG-GUC-CGGGCa-------------CCGG- -5'
14591 3' -59.5 NC_003521.1 + 135012 0.78 0.255751
Target:  5'- aCCAUCuGGCU--GCCGGGCaCCGUGGCCu -3'
miRNA:   3'- -GGUAG-UUGGucCGGUCCG-GGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 220125 0.78 0.263939
Target:  5'- gCGUCcGCCcagaaAGGCCAGGCCCGUGaaggugaugaacagcGCCa -3'
miRNA:   3'- gGUAGuUGG-----UCCGGUCCGGGCAC---------------CGG- -5'
14591 3' -59.5 NC_003521.1 + 167825 0.78 0.279708
Target:  5'- -uGUCAGCCAgagcaggagcGGCCAGGCCCcccgcGGCCg -3'
miRNA:   3'- ggUAGUUGGU----------CCGGUCCGGGca---CCGG- -5'
14591 3' -59.5 NC_003521.1 + 162944 0.77 0.285338
Target:  5'- aCCAUCAACUuccacuacgAGGCCGGcgccaucGCCCGUcuGGCCa -3'
miRNA:   3'- -GGUAGUUGG---------UCCGGUC-------CGGGCA--CCGG- -5'
14591 3' -59.5 NC_003521.1 + 98420 0.77 0.305415
Target:  5'- aCGUUGGCCAgggcGGCCAGGgCCGcGGCCu -3'
miRNA:   3'- gGUAGUUGGU----CCGGUCCgGGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 151648 0.77 0.312119
Target:  5'- aCGUcCAGCaGGGCCAGGCCCacGGCCc -3'
miRNA:   3'- gGUA-GUUGgUCCGGUCCGGGcaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 70977 0.76 0.332897
Target:  5'- aCAcCGGCCAGGCCcuGUCCGUGGUg -3'
miRNA:   3'- gGUaGUUGGUCCGGucCGGGCACCGg -5'
14591 3' -59.5 NC_003521.1 + 139199 0.76 0.347302
Target:  5'- aCGcgCuACCAGcGCCGGGCCC-UGGCCg -3'
miRNA:   3'- gGUa-GuUGGUC-CGGUCCGGGcACCGG- -5'
14591 3' -59.5 NC_003521.1 + 28314 0.76 0.362149
Target:  5'- cUCAUCAuCCAGGCCuacguGGUCuCGUcGGCCa -3'
miRNA:   3'- -GGUAGUuGGUCCGGu----CCGG-GCA-CCGG- -5'
14591 3' -59.5 NC_003521.1 + 195513 0.76 0.362149
Target:  5'- gCCGUCGGCCAGcUCGGGCuCCGgcuccUGGCCc -3'
miRNA:   3'- -GGUAGUUGGUCcGGUCCG-GGC-----ACCGG- -5'
14591 3' -59.5 NC_003521.1 + 152728 0.75 0.369736
Target:  5'- uCCAUgAACUucGCCGaguGGCCCGUGGUCa -3'
miRNA:   3'- -GGUAgUUGGucCGGU---CCGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 17742 0.75 0.401153
Target:  5'- cCCGUCGGCCgAGGCCGGGgaaC-UGGCCg -3'
miRNA:   3'- -GGUAGUUGG-UCCGGUCCgg-GcACCGG- -5'
14591 3' -59.5 NC_003521.1 + 217841 0.74 0.416659
Target:  5'- aCCGUCAACCAGGCgCAGaGCCCcagcagcacgacGUGcacccgaGCCa -3'
miRNA:   3'- -GGUAGUUGGUCCG-GUC-CGGG------------CAC-------CGG- -5'
14591 3' -59.5 NC_003521.1 + 43829 0.74 0.417486
Target:  5'- -gGUCAGCCGccgccGGCCgcGGGCCCGUcacaggcgccccGGCCg -3'
miRNA:   3'- ggUAGUUGGU-----CCGG--UCCGGGCA------------CCGG- -5'
14591 3' -59.5 NC_003521.1 + 109423 0.74 0.417486
Target:  5'- gCAUCAugGCCAGGauagaCAGGgCCGUGGgCa -3'
miRNA:   3'- gGUAGU--UGGUCCg----GUCCgGGCACCgG- -5'
14591 3' -59.5 NC_003521.1 + 62781 0.74 0.425803
Target:  5'- cCCAcCAGCCugacGGGCCcGGCgucuuugacgaCCGUGGCCg -3'
miRNA:   3'- -GGUaGUUGG----UCCGGuCCG-----------GGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 165770 0.74 0.425803
Target:  5'- cCCAUCAucguGCCgaAGGCCA-GCCCGcUGGCg -3'
miRNA:   3'- -GGUAGU----UGG--UCCGGUcCGGGC-ACCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.