miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 3' -59.5 NC_003521.1 + 149628 0.66 0.841349
Target:  5'- -cGGCGCUGGaCGcCGCCgGCGAGg- -3'
miRNA:   3'- uuCUGCGACCaGUcGUGGgCGCUCgu -5'
14592 3' -59.5 NC_003521.1 + 112541 0.66 0.825338
Target:  5'- -cGGCgaGCUGGUCAGCACCauguuCGAGa- -3'
miRNA:   3'- uuCUG--CGACCAGUCGUGGgc---GCUCgu -5'
14592 3' -59.5 NC_003521.1 + 192809 0.66 0.833429
Target:  5'- cGGAuCGCUGG-CAGCAgCCGCaGaAGCc -3'
miRNA:   3'- uUCU-GCGACCaGUCGUgGGCG-C-UCGu -5'
14592 3' -59.5 NC_003521.1 + 59659 0.66 0.833429
Target:  5'- cAGACGCUGG-C-GCGCCUGgagGAGCu -3'
miRNA:   3'- uUCUGCGACCaGuCGUGGGCg--CUCGu -5'
14592 3' -59.5 NC_003521.1 + 74810 0.66 0.833429
Target:  5'- cGAGACGCggacGGaCGGCGCCgagCGCGAcgGCGu -3'
miRNA:   3'- -UUCUGCGa---CCaGUCGUGG---GCGCU--CGU- -5'
14592 3' -59.5 NC_003521.1 + 130745 0.66 0.841349
Target:  5'- cGGGACGU--GUCGGCGggCGCGAGCGc -3'
miRNA:   3'- -UUCUGCGacCAGUCGUggGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 38779 0.66 0.848327
Target:  5'- cAGACaCUGGUCGGUACCaGCGGuugaguggacaacGCAg -3'
miRNA:   3'- uUCUGcGACCAGUCGUGGgCGCU-------------CGU- -5'
14592 3' -59.5 NC_003521.1 + 15339 0.66 0.808675
Target:  5'- --cGCGCUGGUgCAGCAgUCGCGAc-- -3'
miRNA:   3'- uucUGCGACCA-GUCGUgGGCGCUcgu -5'
14592 3' -59.5 NC_003521.1 + 105440 0.66 0.808675
Target:  5'- -cGGCaC-GGuUUGGCGCCCGCGGGCGa -3'
miRNA:   3'- uuCUGcGaCC-AGUCGUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 100420 0.66 0.825338
Target:  5'- -uGAUGgUGGUgagaagaagcggCGGCGCUCGgGAGCAg -3'
miRNA:   3'- uuCUGCgACCA------------GUCGUGGGCgCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 135371 0.66 0.808675
Target:  5'- ---cCGCggcGGUUAuCGCCCGCGGGCGc -3'
miRNA:   3'- uucuGCGa--CCAGUcGUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 135431 0.66 0.808675
Target:  5'- -cGGCGCgauUUGGCGCCCGCGGGa- -3'
miRNA:   3'- uuCUGCGaccAGUCGUGGGCGCUCgu -5'
14592 3' -59.5 NC_003521.1 + 175196 0.66 0.817085
Target:  5'- -uGGCGC-GcGUCAGCuCCuCGCGGGCc -3'
miRNA:   3'- uuCUGCGaC-CAGUCGuGG-GCGCUCGu -5'
14592 3' -59.5 NC_003521.1 + 48424 0.66 0.808675
Target:  5'- cGAGGCGCUGGaaCAGCA-CCGUcAGCu -3'
miRNA:   3'- -UUCUGCGACCa-GUCGUgGGCGcUCGu -5'
14592 3' -59.5 NC_003521.1 + 217234 0.66 0.849093
Target:  5'- gAGGAUGCaGGcCAGCACCCcCGcGCc -3'
miRNA:   3'- -UUCUGCGaCCaGUCGUGGGcGCuCGu -5'
14592 3' -59.5 NC_003521.1 + 15031 0.66 0.847559
Target:  5'- gAGGACGcCUGGcacccugacgagCGGCGCgagCGCGAGCGg -3'
miRNA:   3'- -UUCUGC-GACCa-----------GUCGUGg--GCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 239421 0.66 0.841349
Target:  5'- -cGuCGCucuUGGUCAGCGUCCGC-AGCAg -3'
miRNA:   3'- uuCuGCG---ACCAGUCGUGGGCGcUCGU- -5'
14592 3' -59.5 NC_003521.1 + 59147 0.66 0.825338
Target:  5'- -uGAaaaaGCUGGUggaucagcugCGGCACggcgCCGCGGGCAg -3'
miRNA:   3'- uuCUg---CGACCA----------GUCGUG----GGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 88062 0.66 0.808675
Target:  5'- uGAGGuCGCggUGGUCggcGGCGCCCGUGAcCAc -3'
miRNA:   3'- -UUCU-GCG--ACCAG---UCGUGGGCGCUcGU- -5'
14592 3' -59.5 NC_003521.1 + 101633 0.66 0.808675
Target:  5'- -cGGCGCUGG-UAGCGCgUcacguucaGCGAGCGc -3'
miRNA:   3'- uuCUGCGACCaGUCGUGgG--------CGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.