miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 3' -59.5 NC_003521.1 + 31492 0.67 0.773625
Target:  5'- -cGuCGCgGGUUGGCacaggcccaGCCCGUGGGCAa -3'
miRNA:   3'- uuCuGCGaCCAGUCG---------UGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 206113 0.68 0.698418
Target:  5'- aGGGAgGCcGGUCAGCugCUGCGcgauGCu -3'
miRNA:   3'- -UUCUgCGaCCAGUCGugGGCGCu---CGu -5'
14592 3' -59.5 NC_003521.1 + 154678 0.68 0.736698
Target:  5'- cGAGACGCUGGa-GGCuACCgCGUGuGCGa -3'
miRNA:   3'- -UUCUGCGACCagUCG-UGG-GCGCuCGU- -5'
14592 3' -59.5 NC_003521.1 + 228575 0.68 0.736698
Target:  5'- cAGACGCccuUGagguuGUCGGCguGCCCGCaGAGCAu -3'
miRNA:   3'- uUCUGCG---AC-----CAGUCG--UGGGCG-CUCGU- -5'
14592 3' -59.5 NC_003521.1 + 47382 0.67 0.755363
Target:  5'- -cGACGaagGGUCccagGGCGCUgCGCGAGCGg -3'
miRNA:   3'- uuCUGCga-CCAG----UCGUGG-GCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 99601 0.67 0.764549
Target:  5'- -cGGCGCguUGGUgaccugCAGCGCCCGgCGGcGCAg -3'
miRNA:   3'- uuCUGCG--ACCA------GUCGUGGGC-GCU-CGU- -5'
14592 3' -59.5 NC_003521.1 + 130476 0.67 0.764549
Target:  5'- ---gUGCUGGccCAGCuACaCCGCGAGCGc -3'
miRNA:   3'- uucuGCGACCa-GUCG-UG-GGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 138266 0.67 0.772722
Target:  5'- -uGGCGaCUGGUCuccaagggccagaAGCA-CCGCGAGUAu -3'
miRNA:   3'- uuCUGC-GACCAG-------------UCGUgGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 7442 0.67 0.773625
Target:  5'- cGGACGC-GGcgcaCAGCACCaCGCGGGaCGu -3'
miRNA:   3'- uUCUGCGaCCa---GUCGUGG-GCGCUC-GU- -5'
14592 3' -59.5 NC_003521.1 + 73578 0.68 0.695507
Target:  5'- cGGGCGCUGGUCaugaacgaggaccuGGCGCCCuacaccaagauGCGGcGCGc -3'
miRNA:   3'- uUCUGCGACCAG--------------UCGUGGG-----------CGCU-CGU- -5'
14592 3' -59.5 NC_003521.1 + 105181 0.69 0.666191
Target:  5'- -cGACGCUGGgccccccGCcgaucgugggauccGCCCGCGAGCu -3'
miRNA:   3'- uuCUGCGACCagu----CG--------------UGGGCGCUCGu -5'
14592 3' -59.5 NC_003521.1 + 127322 0.69 0.65931
Target:  5'- -uGGCGUUGGUCAGCGgCUGCcGGUc -3'
miRNA:   3'- uuCUGCGACCAGUCGUgGGCGcUCGu -5'
14592 3' -59.5 NC_003521.1 + 145346 0.78 0.234317
Target:  5'- uAAGACGCUGGUCgAGUGCCaCGUGAuGCAc -3'
miRNA:   3'- -UUCUGCGACCAG-UCGUGG-GCGCU-CGU- -5'
14592 3' -59.5 NC_003521.1 + 238481 0.77 0.245498
Target:  5'- gGAGACGCggcccagGGUCAGCAgCCCcaggaggccggcGCGAGCAg -3'
miRNA:   3'- -UUCUGCGa------CCAGUCGU-GGG------------CGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 213953 0.72 0.513322
Target:  5'- aGAGACGCgGGUgGGCGCCgGCucGGGCc -3'
miRNA:   3'- -UUCUGCGaCCAgUCGUGGgCG--CUCGu -5'
14592 3' -59.5 NC_003521.1 + 70278 0.7 0.60018
Target:  5'- cAGGCGCaGGUCGGCGCCgaagagaaaGCGGuGCAg -3'
miRNA:   3'- uUCUGCGaCCAGUCGUGGg--------CGCU-CGU- -5'
14592 3' -59.5 NC_003521.1 + 132708 0.7 0.619874
Target:  5'- cGGGACGCggcacUGGUCcaaGGCGacgaagugUCCGCGAGCAc -3'
miRNA:   3'- -UUCUGCG-----ACCAG---UCGU--------GGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 157972 0.69 0.639603
Target:  5'- -cGGCGCUGG-UAGCgacgccgccGCCCGCG-GCGa -3'
miRNA:   3'- uuCUGCGACCaGUCG---------UGGGCGCuCGU- -5'
14592 3' -59.5 NC_003521.1 + 232397 0.69 0.649463
Target:  5'- --cGCGCUGG-CuGCGCCUGCG-GCAc -3'
miRNA:   3'- uucUGCGACCaGuCGUGGGCGCuCGU- -5'
14592 3' -59.5 NC_003521.1 + 77096 0.69 0.65931
Target:  5'- -cGGCGCaUGGggucgCGGCACUCGCGcauGCAc -3'
miRNA:   3'- uuCUGCG-ACCa----GUCGUGGGCGCu--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.