miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 3' -59.5 NC_003521.1 + 213409 1.06 0.002946
Target:  5'- gAAGACGCUGGUCAGCACCCGCGAGCAg -3'
miRNA:   3'- -UUCUGCGACCAGUCGUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 145346 0.78 0.234317
Target:  5'- uAAGACGCUGGUCgAGUGCCaCGUGAuGCAc -3'
miRNA:   3'- -UUCUGCGACCAG-UCGUGG-GCGCU-CGU- -5'
14592 3' -59.5 NC_003521.1 + 238481 0.77 0.245498
Target:  5'- gGAGACGCggcccagGGUCAGCAgCCCcaggaggccggcGCGAGCAg -3'
miRNA:   3'- -UUCUGCGa------CCAGUCGU-GGG------------CGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 137501 0.75 0.336385
Target:  5'- -cGGCGCUGGcgcgUCAGCGCCUGCugGAGUAc -3'
miRNA:   3'- uuCUGCGACC----AGUCGUGGGCG--CUCGU- -5'
14592 3' -59.5 NC_003521.1 + 103929 0.74 0.398409
Target:  5'- cAGACGCaGGUagAGCAUCUGCGAGCc -3'
miRNA:   3'- uUCUGCGaCCAg-UCGUGGGCGCUCGu -5'
14592 3' -59.5 NC_003521.1 + 44895 0.73 0.440716
Target:  5'- cAGGACgGCUauGUcCAGUGCCCGCGAGCAg -3'
miRNA:   3'- -UUCUG-CGAc-CA-GUCGUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 152958 0.72 0.503959
Target:  5'- -cGGC-CUGGcCAGCGCCUGCGAGg- -3'
miRNA:   3'- uuCUGcGACCaGUCGUGGGCGCUCgu -5'
14592 3' -59.5 NC_003521.1 + 213953 0.72 0.513322
Target:  5'- aGAGACGCgGGUgGGCGCCgGCucGGGCc -3'
miRNA:   3'- -UUCUGCGaCCAgUCGUGGgCG--CUCGu -5'
14592 3' -59.5 NC_003521.1 + 207807 0.71 0.541817
Target:  5'- -cGGCGCUGGUCaAGCuggccgagaGCCUGCGGGg- -3'
miRNA:   3'- uuCUGCGACCAG-UCG---------UGGGCGCUCgu -5'
14592 3' -59.5 NC_003521.1 + 38253 0.71 0.541817
Target:  5'- gGAGACGCggcccagGGUCAGCAgCCCcaggaggccggcGCGcAGCAg -3'
miRNA:   3'- -UUCUGCGa------CCAGUCGU-GGG------------CGC-UCGU- -5'
14592 3' -59.5 NC_003521.1 + 184478 0.71 0.541817
Target:  5'- gAAGGUGCUGGUguGCGCCCuGCGcGGCc -3'
miRNA:   3'- -UUCUGCGACCAguCGUGGG-CGC-UCGu -5'
14592 3' -59.5 NC_003521.1 + 211314 0.71 0.551435
Target:  5'- aGAGAuCGCgGGUCaacaGGCGguCCCGCGGGCGc -3'
miRNA:   3'- -UUCU-GCGaCCAG----UCGU--GGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 73670 0.7 0.580573
Target:  5'- -uGACGCcaucaacaUCAGCACCUGCGAGUAc -3'
miRNA:   3'- uuCUGCGacc-----AGUCGUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 111191 0.7 0.60018
Target:  5'- gGGGACGUUG---AGCACCCGcCGGGCGg -3'
miRNA:   3'- -UUCUGCGACcagUCGUGGGC-GCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 70278 0.7 0.60018
Target:  5'- cAGGCGCaGGUCGGCGCCgaagagaaaGCGGuGCAg -3'
miRNA:   3'- uUCUGCGaCCAGUCGUGGg--------CGCU-CGU- -5'
14592 3' -59.5 NC_003521.1 + 132708 0.7 0.619874
Target:  5'- cGGGACGCggcacUGGUCcaaGGCGacgaagugUCCGCGAGCAc -3'
miRNA:   3'- -UUCUGCG-----ACCAG---UCGU--------GGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 14196 0.7 0.619874
Target:  5'- cGAGcaaGCUGGUguGCugCgGCGAGCc -3'
miRNA:   3'- -UUCug-CGACCAguCGugGgCGCUCGu -5'
14592 3' -59.5 NC_003521.1 + 157972 0.69 0.639603
Target:  5'- -cGGCGCUGG-UAGCgacgccgccGCCCGCG-GCGa -3'
miRNA:   3'- uuCUGCGACCaGUCG---------UGGGCGCuCGU- -5'
14592 3' -59.5 NC_003521.1 + 232397 0.69 0.649463
Target:  5'- --cGCGCUGG-CuGCGCCUGCG-GCAc -3'
miRNA:   3'- uucUGCGACCaGuCGUGGGCGCuCGU- -5'
14592 3' -59.5 NC_003521.1 + 127322 0.69 0.65931
Target:  5'- -uGGCGUUGGUCAGCGgCUGCcGGUc -3'
miRNA:   3'- uuCUGCGACCAGUCGUgGGCGcUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.