miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 3' -59.5 NC_003521.1 + 975 0.66 0.817085
Target:  5'- cGAGAgGCcggcGGUCuGCuCCCGUGGGCc -3'
miRNA:   3'- -UUCUgCGa---CCAGuCGuGGGCGCUCGu -5'
14592 3' -59.5 NC_003521.1 + 6687 0.68 0.736698
Target:  5'- ---cUGCagGGcCuGCGCCCGCGAGCGc -3'
miRNA:   3'- uucuGCGa-CCaGuCGUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 7442 0.67 0.773625
Target:  5'- cGGACGC-GGcgcaCAGCACCaCGCGGGaCGu -3'
miRNA:   3'- uUCUGCGaCCa---GUCGUGG-GCGCUC-GU- -5'
14592 3' -59.5 NC_003521.1 + 14196 0.7 0.619874
Target:  5'- cGAGcaaGCUGGUguGCugCgGCGAGCc -3'
miRNA:   3'- -UUCug-CGACCAguCGugGgCGCUCGu -5'
14592 3' -59.5 NC_003521.1 + 15031 0.66 0.847559
Target:  5'- gAGGACGcCUGGcacccugacgagCGGCGCgagCGCGAGCGg -3'
miRNA:   3'- -UUCUGC-GACCa-----------GUCGUGg--GCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 15339 0.66 0.808675
Target:  5'- --cGCGCUGGUgCAGCAgUCGCGAc-- -3'
miRNA:   3'- uucUGCGACCA-GUCGUgGGCGCUcgu -5'
14592 3' -59.5 NC_003521.1 + 25380 0.68 0.698418
Target:  5'- -cGGC-CUGGcgcCAGCACCCGCG-GCu -3'
miRNA:   3'- uuCUGcGACCa--GUCGUGGGCGCuCGu -5'
14592 3' -59.5 NC_003521.1 + 26203 0.67 0.773625
Target:  5'- cAGcACGCUGGUCuggcugGGCuACCCGC-AGCu -3'
miRNA:   3'- uUC-UGCGACCAG------UCG-UGGGCGcUCGu -5'
14592 3' -59.5 NC_003521.1 + 31492 0.67 0.773625
Target:  5'- -cGuCGCgGGUUGGCacaggcccaGCCCGUGGGCAa -3'
miRNA:   3'- uuCuGCGaCCAGUCG---------UGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 36954 0.68 0.727234
Target:  5'- -cGACGCUGGUCGucGCAgCggaGCGGGUg -3'
miRNA:   3'- uuCUGCGACCAGU--CGUgGg--CGCUCGu -5'
14592 3' -59.5 NC_003521.1 + 38222 0.67 0.782583
Target:  5'- gGAGGCGCaGGgCGGCcUCgGCGGGCGg -3'
miRNA:   3'- -UUCUGCGaCCaGUCGuGGgCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 38253 0.71 0.541817
Target:  5'- gGAGACGCggcccagGGUCAGCAgCCCcaggaggccggcGCGcAGCAg -3'
miRNA:   3'- -UUCUGCGa------CCAGUCGU-GGG------------CGC-UCGU- -5'
14592 3' -59.5 NC_003521.1 + 38779 0.66 0.848327
Target:  5'- cAGACaCUGGUCGGUACCaGCGGuugaguggacaacGCAg -3'
miRNA:   3'- uUCUGcGACCAGUCGUGGgCGCU-------------CGU- -5'
14592 3' -59.5 NC_003521.1 + 39193 0.66 0.841349
Target:  5'- -cGuCGCucuUGGUCAGCGUCCGC-AGCAg -3'
miRNA:   3'- uuCuGCG---ACCAGUCGUGGGCGcUCGU- -5'
14592 3' -59.5 NC_003521.1 + 42626 0.67 0.763635
Target:  5'- cGGGcCGCUGGgaacacgUCAGCAgCCGCGGuGUAg -3'
miRNA:   3'- -UUCuGCGACC-------AGUCGUgGGCGCU-CGU- -5'
14592 3' -59.5 NC_003521.1 + 44173 0.66 0.841349
Target:  5'- -uGGCGCc-GUCGGUACuCCGCGAGa- -3'
miRNA:   3'- uuCUGCGacCAGUCGUG-GGCGCUCgu -5'
14592 3' -59.5 NC_003521.1 + 44895 0.73 0.440716
Target:  5'- cAGGACgGCUauGUcCAGUGCCCGCGAGCAg -3'
miRNA:   3'- -UUCUG-CGAc-CA-GUCGUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 44944 0.67 0.764549
Target:  5'- -uGACGCUGGggaugggCAGU-CCCGaGAGCGa -3'
miRNA:   3'- uuCUGCGACCa------GUCGuGGGCgCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 47382 0.67 0.755363
Target:  5'- -cGACGaagGGUCccagGGCGCUgCGCGAGCGg -3'
miRNA:   3'- uuCUGCga-CCAG----UCGUGG-GCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 48424 0.66 0.808675
Target:  5'- cGAGGCGCUGGaaCAGCA-CCGUcAGCu -3'
miRNA:   3'- -UUCUGCGACCa-GUCGUgGGCGcUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.