miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 5' -58.4 NC_003521.1 + 169289 0.76 0.432455
Target:  5'- uUCGGCGGCGGGCUcggUGAcgucggccGGCGUCGg -3'
miRNA:   3'- gGGUCGCUGCCCGGa--ACUu-------CCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 175402 0.7 0.749491
Target:  5'- aCCCGGCGcaggUGGGUCagGGAGGCGcgCGu -3'
miRNA:   3'- -GGGUCGCu---GCCCGGaaCUUCCGCa-GC- -5'
14592 5' -58.4 NC_003521.1 + 19735 0.69 0.767524
Target:  5'- aCCAGCGugGcGGU---GAcGGCGUCGg -3'
miRNA:   3'- gGGUCGCugC-CCGgaaCUuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 176168 0.66 0.927816
Target:  5'- gCCCGGUGGCaGGUgguugaugagcgagUUGAcGGCGUCGa -3'
miRNA:   3'- -GGGUCGCUGcCCGg-------------AACUuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 197277 0.72 0.597102
Target:  5'- gCCGGCGGCGGGgagCggGAGGGCGgcUCGa -3'
miRNA:   3'- gGGUCGCUGCCCg--GaaCUUCCGC--AGC- -5'
14592 5' -58.4 NC_003521.1 + 135646 0.71 0.655045
Target:  5'- aUCGGCGGgGGGCCcagcgucGgcGGCGUCGu -3'
miRNA:   3'- gGGUCGCUgCCCGGaa-----CuuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 34286 0.71 0.693434
Target:  5'- -aCGGgGGCGGGCCac--GGGCGUCa -3'
miRNA:   3'- ggGUCgCUGCCCGGaacuUCCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 102917 0.71 0.693434
Target:  5'- gCCAGCcACGGGUacggUUUGAgggccgAGGCGUCGc -3'
miRNA:   3'- gGGUCGcUGCCCG----GAACU------UCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 128383 0.71 0.702936
Target:  5'- aCCAGgGccgccUGGGCCgccUGAgcGGGCGUCGg -3'
miRNA:   3'- gGGUCgCu----GCCCGGa--ACU--UCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 167155 0.7 0.749491
Target:  5'- gCCUugGGCGccuCGGGCguCUUGGAGGCGgccgCGg -3'
miRNA:   3'- -GGG--UCGCu--GCCCG--GAACUUCCGCa---GC- -5'
14592 5' -58.4 NC_003521.1 + 170867 0.7 0.721772
Target:  5'- uCCgCGGgGGCGGGCgCgggUGGucAGGCGUCc -3'
miRNA:   3'- -GG-GUCgCUGCCCG-Ga--ACU--UCCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 177781 0.71 0.702936
Target:  5'- gCCAGggcCGACgGGGCCUguccgcugGuGGGCGUCGu -3'
miRNA:   3'- gGGUC---GCUG-CCCGGAa-------CuUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 87762 0.75 0.458224
Target:  5'- cCCCGGCGGCGgaggaGGCC-UGggGGCcgccucGUCGg -3'
miRNA:   3'- -GGGUCGCUGC-----CCGGaACuuCCG------CAGC- -5'
14592 5' -58.4 NC_003521.1 + 98602 0.7 0.731091
Target:  5'- gCgCAGCGACGaGGCCauggcgagGAGGGCGagagCGg -3'
miRNA:   3'- -GgGUCGCUGC-CCGGaa------CUUCCGCa---GC- -5'
14592 5' -58.4 NC_003521.1 + 113792 0.74 0.530606
Target:  5'- gCCAgcGCGACGGGCaccgcGgcGGCGUCGu -3'
miRNA:   3'- gGGU--CGCUGCCCGgaa--CuuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 37412 0.71 0.693434
Target:  5'- gCCUuguGCGAC-GGCCUgGGAGGCGUgGc -3'
miRNA:   3'- -GGGu--CGCUGcCCGGAaCUUCCGCAgC- -5'
14592 5' -58.4 NC_003521.1 + 164846 0.7 0.740333
Target:  5'- gCCCGGCGA-GGGCCgcuccucgucGggGGUGUg- -3'
miRNA:   3'- -GGGUCGCUgCCCGGaa--------CuuCCGCAgc -5'
14592 5' -58.4 NC_003521.1 + 211207 0.7 0.758558
Target:  5'- cUCCGGgGGCGGGUUggUGAAGGUcuugGUCa -3'
miRNA:   3'- -GGGUCgCUGCCCGGa-ACUUCCG----CAGc -5'
14592 5' -58.4 NC_003521.1 + 45216 0.73 0.585569
Target:  5'- aCCAGCuGGCGGGCCggcugcgcaaccUGGAGcuguaGCGUCGg -3'
miRNA:   3'- gGGUCG-CUGCCCGGa-----------ACUUC-----CGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 114917 0.71 0.683887
Target:  5'- aCCCGcGCGGcCGGGCCUcgUGcaugcuGGGCGUgGa -3'
miRNA:   3'- -GGGU-CGCU-GCCCGGA--ACu-----UCCGCAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.