miRNA display CGI


Results 1 - 20 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14593 3' -58.8 NC_003521.1 + 149223 0.66 0.861457
Target:  5'- -aGGCccacaagaAGCU---GCGGCGCGGCUACu -3'
miRNA:   3'- caCCG--------UCGGcuuUGCCGCGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 56494 0.66 0.846371
Target:  5'- -aGGCAGUacu-GCGGCuGaCGGCCGCGg -3'
miRNA:   3'- caCCGUCGgcuuUGCCG-C-GUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 28839 0.66 0.861457
Target:  5'- -cGGCgccuggacgacgAGCUGcgGCGGCGCGG-CACGg -3'
miRNA:   3'- caCCG------------UCGGCuuUGCCGCGUCgGUGU- -5'
14593 3' -58.8 NC_003521.1 + 129226 0.66 0.846371
Target:  5'- -gGGCAGUC----CGGCGCcgcuGGCCACGc -3'
miRNA:   3'- caCCGUCGGcuuuGCCGCG----UCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 57003 0.66 0.861457
Target:  5'- aUGGCcGCgGucACGGaCGCcGCCACGc -3'
miRNA:   3'- cACCGuCGgCuuUGCC-GCGuCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 137294 0.66 0.861457
Target:  5'- cUGG-AGCUGcGggUGGCGCGGCUGCu -3'
miRNA:   3'- cACCgUCGGC-UuuGCCGCGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 95637 0.66 0.85701
Target:  5'- --aGCAGCCGGucACGGCGgguucaggcacgaauUAGCUACAc -3'
miRNA:   3'- cacCGUCGGCUu-UGCCGC---------------GUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 19155 0.66 0.846371
Target:  5'- cGUGGUGaCCGAGagcACGGCGCugguGGCCgACGu -3'
miRNA:   3'- -CACCGUcGGCUU---UGCCGCG----UCGG-UGU- -5'
14593 3' -58.8 NC_003521.1 + 137162 0.66 0.846371
Target:  5'- aUGGCcgcGGCCGcAGCGGCcGCcGCCGa- -3'
miRNA:   3'- cACCG---UCGGCuUUGCCG-CGuCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 212899 0.66 0.854008
Target:  5'- -gGGguGUCGGuggacucgagGACGGCGCGGUCu-- -3'
miRNA:   3'- caCCguCGGCU----------UUGCCGCGUCGGugu -5'
14593 3' -58.8 NC_003521.1 + 59078 0.66 0.846371
Target:  5'- -cGuCGGCCGGAuc-GCGCGGCCGCu -3'
miRNA:   3'- caCcGUCGGCUUugcCGCGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 187900 0.66 0.854008
Target:  5'- -gGGCGGCgGggGCaGGUcgaucaGCAGCuCGCGa -3'
miRNA:   3'- caCCGUCGgCuuUG-CCG------CGUCG-GUGU- -5'
14593 3' -58.8 NC_003521.1 + 143068 0.66 0.844821
Target:  5'- gGUGGC-GCCGGuggcgauacguCGGauuCGCAGCCGCc -3'
miRNA:   3'- -CACCGuCGGCUuu---------GCC---GCGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 172098 0.66 0.846371
Target:  5'- uUGGCGGCCGAcucguaAAUGG-GCAGCaugaaACu -3'
miRNA:   3'- cACCGUCGGCU------UUGCCgCGUCGg----UGu -5'
14593 3' -58.8 NC_003521.1 + 10018 0.66 0.860721
Target:  5'- -gGGCAGCCGcAGCaGCGUgaccauugucaagGGCgGCAa -3'
miRNA:   3'- caCCGUCGGCuUUGcCGCG-------------UCGgUGU- -5'
14593 3' -58.8 NC_003521.1 + 186930 0.66 0.875773
Target:  5'- -cGGUGGCgGggGCGGCgGCGaaCGCAa -3'
miRNA:   3'- caCCGUCGgCuuUGCCG-CGUcgGUGU- -5'
14593 3' -58.8 NC_003521.1 + 222687 0.66 0.861457
Target:  5'- --aGCGGCuCGAccuCGGUGCGGCCGg- -3'
miRNA:   3'- cacCGUCG-GCUuu-GCCGCGUCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 27491 0.66 0.845597
Target:  5'- uGUGGCGGUCGGAgaacuccACGGggggcgUGCGGCC-CGa -3'
miRNA:   3'- -CACCGUCGGCUU-------UGCC------GCGUCGGuGU- -5'
14593 3' -58.8 NC_003521.1 + 148414 0.66 0.854008
Target:  5'- -aGGgAGCCaugguGCGG-GCGGCCGCGc -3'
miRNA:   3'- caCCgUCGGcuu--UGCCgCGUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 42794 0.66 0.846371
Target:  5'- -cGuGCAGCCc-GGCGGCuGCAcgcGCCGCAa -3'
miRNA:   3'- caC-CGUCGGcuUUGCCG-CGU---CGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.