miRNA display CGI


Results 1 - 20 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14593 3' -58.8 NC_003521.1 + 213797 0.92 0.034578
Target:  5'- uGUGGaC-GCCGAAACGGCGCAGCCACAu -3'
miRNA:   3'- -CACC-GuCGGCUUUGCCGCGUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 215027 0.83 0.12608
Target:  5'- cUGGCAGCUGAugGugGGCuGCAGCCGCGu -3'
miRNA:   3'- cACCGUCGGCU--UugCCG-CGUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 103662 0.82 0.139335
Target:  5'- -cGGCGGCCGcuGCGGcCGCGGCCAUg -3'
miRNA:   3'- caCCGUCGGCuuUGCC-GCGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 114740 0.81 0.17393
Target:  5'- -cGGCAcGCCGuggGggUGGCGCGGCCACAg -3'
miRNA:   3'- caCCGU-CGGC---UuuGCCGCGUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 103110 0.8 0.191638
Target:  5'- cGUGGCAGgCGAAGagcUGGCGCAGCgCGCGg -3'
miRNA:   3'- -CACCGUCgGCUUU---GCCGCGUCG-GUGU- -5'
14593 3' -58.8 NC_003521.1 + 167667 0.8 0.205939
Target:  5'- -aGGUcgcaGGCCGAGGCGGCGCcGCCGCc -3'
miRNA:   3'- caCCG----UCGGCUUUGCCGCGuCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 120569 0.79 0.210405
Target:  5'- uUGGguGUCGAGgcgaugcACGGCGCGGCCGCc -3'
miRNA:   3'- cACCguCGGCUU-------UGCCGCGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 109331 0.79 0.210907
Target:  5'- -aGGCGGuuGAGGCGGCaGCAGCCGg- -3'
miRNA:   3'- caCCGUCggCUUUGCCG-CGUCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 113853 0.79 0.210907
Target:  5'- -gGGCGGCCGGcgacGACGGCGCGGguuCCGCGg -3'
miRNA:   3'- caCCGUCGGCU----UUGCCGCGUC---GGUGU- -5'
14593 3' -58.8 NC_003521.1 + 69494 0.79 0.231822
Target:  5'- -cGGUGGUCGuAGACGGCGCAGgCCGCGu -3'
miRNA:   3'- caCCGUCGGC-UUUGCCGCGUC-GGUGU- -5'
14593 3' -58.8 NC_003521.1 + 150568 0.77 0.278875
Target:  5'- gGUGGCGGCgGcgGCGGCGCGGCUc-- -3'
miRNA:   3'- -CACCGUCGgCuuUGCCGCGUCGGugu -5'
14593 3' -58.8 NC_003521.1 + 76366 0.77 0.291768
Target:  5'- -cGGCAGCggCGAccguGACGGcCGCGGCCGCGg -3'
miRNA:   3'- caCCGUCG--GCU----UUGCC-GCGUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 76312 0.77 0.298387
Target:  5'- -cGGCAGCgGAGgugGCGGCGaCAGCUGCGg -3'
miRNA:   3'- caCCGUCGgCUU---UGCCGC-GUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 5540 0.77 0.298387
Target:  5'- -cGGCAGCCGgcGCGGCcGCcGCCAUc -3'
miRNA:   3'- caCCGUCGGCuuUGCCG-CGuCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 99200 0.76 0.318941
Target:  5'- gGUGGCGGCgGAGgauACGGCGgGGuCCGCGg -3'
miRNA:   3'- -CACCGUCGgCUU---UGCCGCgUC-GGUGU- -5'
14593 3' -58.8 NC_003521.1 + 126715 0.76 0.326025
Target:  5'- gGUGaGCAGauCCGAGGCGGCGCGGUCGg- -3'
miRNA:   3'- -CAC-CGUC--GGCUUUGCCGCGUCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 111238 0.76 0.326025
Target:  5'- cGUcGCGGCCGgcGCGGCGCGGCggaGCAg -3'
miRNA:   3'- -CAcCGUCGGCuuUGCCGCGUCGg--UGU- -5'
14593 3' -58.8 NC_003521.1 + 47631 0.76 0.333224
Target:  5'- -aGGCGGCCGuGACGGCggcucuggcgGCAGCUGCGc -3'
miRNA:   3'- caCCGUCGGCuUUGCCG----------CGUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 63226 0.76 0.34054
Target:  5'- -cGGCAGCgGAAcggccggaaccgGCGGCGCcGCCACc -3'
miRNA:   3'- caCCGUCGgCUU------------UGCCGCGuCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 187298 0.76 0.34054
Target:  5'- -cGGCAGCCcGGugGGaGCGGCCGCGu -3'
miRNA:   3'- caCCGUCGGcUUugCCgCGUCGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.