miRNA display CGI


Results 1 - 20 of 441 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14593 3' -58.8 NC_003521.1 + 57178 0.74 0.444955
Target:  5'- cGUGccGCAGCaCGAAGCGGCGCAGggagucaUCGCAc -3'
miRNA:   3'- -CAC--CGUCG-GCUUUGCCGCGUC-------GGUGU- -5'
14593 3' -58.8 NC_003521.1 + 143172 0.75 0.378839
Target:  5'- cGUGGgGGUCGGAccCGGCGCcGCCGCGa -3'
miRNA:   3'- -CACCgUCGGCUUu-GCCGCGuCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 126510 0.74 0.410655
Target:  5'- -aGGUGGCCGAGuagcgcgagaaagGCGaGCGCAGCCAg- -3'
miRNA:   3'- caCCGUCGGCUU-------------UGC-CGCGUCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 226587 0.74 0.411492
Target:  5'- -gGGCAGCaGGAucACGGCGUAGCC-CAg -3'
miRNA:   3'- caCCGUCGgCUU--UGCCGCGUCGGuGU- -5'
14593 3' -58.8 NC_003521.1 + 77415 0.74 0.419924
Target:  5'- -cGGCAGCCGAcGACGGgGCcacGGCCGa- -3'
miRNA:   3'- caCCGUCGGCU-UUGCCgCG---UCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 108776 0.74 0.419924
Target:  5'- -aGGC-GCUGAGgcGCGGCaGCAGCCACc -3'
miRNA:   3'- caCCGuCGGCUU--UGCCG-CGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 152366 0.74 0.428459
Target:  5'- -gGGcCGGCCGggGCGGCGC-GCCc-- -3'
miRNA:   3'- caCC-GUCGGCuuUGCCGCGuCGGugu -5'
14593 3' -58.8 NC_003521.1 + 91981 0.74 0.437097
Target:  5'- -cGGCGGCCGAucCGGCGCgaacggagcgggAGCgGCGa -3'
miRNA:   3'- caCCGUCGGCUuuGCCGCG------------UCGgUGU- -5'
14593 3' -58.8 NC_003521.1 + 163186 0.74 0.437097
Target:  5'- -cGGCAGCgGAcacggugguGGCGGCGgCAGCgGCAg -3'
miRNA:   3'- caCCGUCGgCU---------UUGCCGC-GUCGgUGU- -5'
14593 3' -58.8 NC_003521.1 + 240666 0.75 0.378839
Target:  5'- -cGGCGGCCGGAGCcGUGCAGaaaCACGu -3'
miRNA:   3'- caCCGUCGGCUUUGcCGCGUCg--GUGU- -5'
14593 3' -58.8 NC_003521.1 + 129940 0.75 0.378839
Target:  5'- ----uGGCCGAGACGGCGCAguucuGCCGCGg -3'
miRNA:   3'- caccgUCGGCUUUGCCGCGU-----CGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 117 0.75 0.378839
Target:  5'- -cGGCGGCCGGAGCcGUGCAGaaaCACGu -3'
miRNA:   3'- caCCGUCGGCUUUGcCGCGUCg--GUGU- -5'
14593 3' -58.8 NC_003521.1 + 120569 0.79 0.210405
Target:  5'- uUGGguGUCGAGgcgaugcACGGCGCGGCCGCc -3'
miRNA:   3'- cACCguCGGCUU-------UGCCGCGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 69494 0.79 0.231822
Target:  5'- -cGGUGGUCGuAGACGGCGCAGgCCGCGu -3'
miRNA:   3'- caCCGUCGGC-UUUGCCGCGUC-GGUGU- -5'
14593 3' -58.8 NC_003521.1 + 150568 0.77 0.278875
Target:  5'- gGUGGCGGCgGcgGCGGCGCGGCUc-- -3'
miRNA:   3'- -CACCGUCGgCuuUGCCGCGUCGGugu -5'
14593 3' -58.8 NC_003521.1 + 5540 0.77 0.298387
Target:  5'- -cGGCAGCCGgcGCGGCcGCcGCCAUc -3'
miRNA:   3'- caCCGUCGGCuuUGCCG-CGuCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 99200 0.76 0.318941
Target:  5'- gGUGGCGGCgGAGgauACGGCGgGGuCCGCGg -3'
miRNA:   3'- -CACCGUCGgCUU---UGCCGCgUC-GGUGU- -5'
14593 3' -58.8 NC_003521.1 + 187298 0.76 0.34054
Target:  5'- -cGGCAGCCcGGugGGaGCGGCCGCGu -3'
miRNA:   3'- caCCGUCGGcUUugCCgCGUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 63226 0.76 0.34054
Target:  5'- -cGGCAGCgGAAcggccggaaccgGCGGCGCcGCCACc -3'
miRNA:   3'- caCCGUCGgCUU------------UGCCGCGuCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 114960 0.76 0.347971
Target:  5'- -cGGCGGCUGcuGCGGCGuCAGUCGCc -3'
miRNA:   3'- caCCGUCGGCuuUGCCGC-GUCGGUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.