miRNA display CGI


Results 1 - 20 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14593 3' -58.8 NC_003521.1 + 20 0.67 0.829751
Target:  5'- uGUGGCgcguguuugccguGGCCGGGAuCGGUG-AGUCACGg -3'
miRNA:   3'- -CACCG-------------UCGGCUUU-GCCGCgUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 117 0.75 0.378839
Target:  5'- -cGGCGGCCGGAGCcGUGCAGaaaCACGu -3'
miRNA:   3'- caCCGUCGGCUUUGcCGCGUCg--GUGU- -5'
14593 3' -58.8 NC_003521.1 + 351 0.67 0.814076
Target:  5'- cGUGaGCuGCCgGAGGCGGCGCcuGCgACc -3'
miRNA:   3'- -CAC-CGuCGG-CUUUGCCGCGu-CGgUGu -5'
14593 3' -58.8 NC_003521.1 + 1035 0.66 0.875773
Target:  5'- -cGcGCAGCCaGAuggcCGGCGUcggGGCCACc -3'
miRNA:   3'- caC-CGUCGG-CUuu--GCCGCG---UCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 5303 0.7 0.665382
Target:  5'- -cGGCAuguuucGCgGggGCGGCGUgccccgccGGCCGCGa -3'
miRNA:   3'- caCCGU------CGgCuuUGCCGCG--------UCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 5496 0.69 0.70445
Target:  5'- -cGGCAGaaacaccaGAGGCGGUGUAGCCGu- -3'
miRNA:   3'- caCCGUCgg------CUUUGCCGCGUCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 5540 0.77 0.298387
Target:  5'- -cGGCAGCCGgcGCGGCcGCcGCCAUc -3'
miRNA:   3'- caCCGUCGGCuuUGCCG-CGuCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 6078 0.69 0.714095
Target:  5'- aUGcGaCGGCCGGugcGGCGGCGUuccGCCACGg -3'
miRNA:   3'- cAC-C-GUCGGCU---UUGCCGCGu--CGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 6226 0.67 0.822398
Target:  5'- -cGGCGGuCCGAAuggagacCGGCGCucCCGCGg -3'
miRNA:   3'- caCCGUC-GGCUUu------GCCGCGucGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 6492 0.71 0.616035
Target:  5'- -cGGCAGCgGAGGCGGUGaCGGCa--- -3'
miRNA:   3'- caCCGUCGgCUUUGCCGC-GUCGgugu -5'
14593 3' -58.8 NC_003521.1 + 7423 0.73 0.490905
Target:  5'- -gGGCcaggAGCCGAGACGGCaGCGGCaGCu -3'
miRNA:   3'- caCCG----UCGGCUUUGCCG-CGUCGgUGu -5'
14593 3' -58.8 NC_003521.1 + 7653 0.73 0.463593
Target:  5'- -cGGCGGCCGccacGGCGGCGCGGacaGCGg -3'
miRNA:   3'- caCCGUCGGCu---UUGCCGCGUCgg-UGU- -5'
14593 3' -58.8 NC_003521.1 + 7737 0.7 0.645666
Target:  5'- -gGGCGGCgCGAGcgGCGGagGCGGCgGCAg -3'
miRNA:   3'- caCCGUCG-GCUU--UGCCg-CGUCGgUGU- -5'
14593 3' -58.8 NC_003521.1 + 7810 0.75 0.37884
Target:  5'- -cGGCAGCUG-GACGGCGUcaaGGCCAUc -3'
miRNA:   3'- caCCGUCGGCuUUGCCGCG---UCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 7967 0.69 0.714095
Target:  5'- gGUGucGCGGCCGGGAgGGUccGCGGCgGCGg -3'
miRNA:   3'- -CAC--CGUCGGCUUUgCCG--CGUCGgUGU- -5'
14593 3' -58.8 NC_003521.1 + 8418 0.71 0.586505
Target:  5'- cUGGCGuuGCCGugccGCaGGCGCAGCCAg- -3'
miRNA:   3'- cACCGU--CGGCuu--UG-CCGCGUCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 8902 0.73 0.452006
Target:  5'- cUGGUAGCUGGcuACGGCGCGggagaagagccgcuGCCGCAg -3'
miRNA:   3'- cACCGUCGGCUu-UGCCGCGU--------------CGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 10018 0.66 0.860721
Target:  5'- -gGGCAGCCGcAGCaGCGUgaccauugucaagGGCgGCAa -3'
miRNA:   3'- caCCGUCGGCuUUGcCGCG-------------UCGgUGU- -5'
14593 3' -58.8 NC_003521.1 + 13850 0.66 0.861458
Target:  5'- uUGGCucGGCgCGGgggucucugcgGGCGGCGCcGCCAUg -3'
miRNA:   3'- cACCG--UCG-GCU-----------UUGCCGCGuCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 14437 0.7 0.675206
Target:  5'- cGUGGUgcacacGGCCcugcGGCGGCGuCAGCCGCc -3'
miRNA:   3'- -CACCG------UCGGcu--UUGCCGC-GUCGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.