miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 3' -56.9 NC_003521.1 + 195950 0.66 0.937031
Target:  5'- cCugCGUG--GGCCacaggCUCUGGCAGCg -3'
miRNA:   3'- cGugGCACuaCCGGca---GAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 109356 0.66 0.932254
Target:  5'- aGCGCCGaGAaGGaC-UCgUCCAGCGGCa -3'
miRNA:   3'- -CGUGGCaCUaCCgGcAG-AGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 27751 0.66 0.932254
Target:  5'- aGCGCCGcGAU-GUCGUC-CCGacggcGCAGCu -3'
miRNA:   3'- -CGUGGCaCUAcCGGCAGaGGU-----CGUCG- -5'
14595 3' -56.9 NC_003521.1 + 190559 0.66 0.935147
Target:  5'- aGCGCCGcucguacucGCCGUacaUCUGGCAGCa -3'
miRNA:   3'- -CGUGGCacuac----CGGCAg--AGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 222990 0.66 0.925713
Target:  5'- uGCGCCcacuugguauggcgGUGggGGUCGUCguccgCCGGUcGCa -3'
miRNA:   3'- -CGUGG--------------CACuaCCGGCAGa----GGUCGuCG- -5'
14595 3' -56.9 NC_003521.1 + 34355 0.66 0.941587
Target:  5'- -gGCCGUGAggcccagguccUGGgCGUUgcgcaCCAGCAGg -3'
miRNA:   3'- cgUGGCACU-----------ACCgGCAGa----GGUCGUCg -5'
14595 3' -56.9 NC_003521.1 + 168206 0.66 0.932254
Target:  5'- aGCACgGUGAUGuuguGCag-CUUgAGCAGCg -3'
miRNA:   3'- -CGUGgCACUAC----CGgcaGAGgUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 10495 0.66 0.927256
Target:  5'- uGCGCCGgcgggGAUGGCgUGgccCcCCAgGCGGCg -3'
miRNA:   3'- -CGUGGCa----CUACCG-GCa--GaGGU-CGUCG- -5'
14595 3' -56.9 NC_003521.1 + 220950 0.66 0.927256
Target:  5'- aGCGCCGacgcGGCCGUCagCAgggagcgcuGCAGCu -3'
miRNA:   3'- -CGUGGCacuaCCGGCAGagGU---------CGUCG- -5'
14595 3' -56.9 NC_003521.1 + 43486 0.66 0.932254
Target:  5'- -gGCCGUGcUGGCCG----CGGCGGCc -3'
miRNA:   3'- cgUGGCACuACCGGCagagGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 225849 0.66 0.940243
Target:  5'- cGCGCuCGUGGUGgugcgggcacagguGCCGgugCUCCAuGC-GCg -3'
miRNA:   3'- -CGUG-GCACUAC--------------CGGCa--GAGGU-CGuCG- -5'
14595 3' -56.9 NC_003521.1 + 57408 0.66 0.937031
Target:  5'- aGCGCCGUGcgGucgcccaCCGUCUCgCGGacgGGCu -3'
miRNA:   3'- -CGUGGCACuaCc------GGCAGAG-GUCg--UCG- -5'
14595 3' -56.9 NC_003521.1 + 168407 0.66 0.941587
Target:  5'- cCGCCGuUGGUGGCUagggCgGGCGGCa -3'
miRNA:   3'- cGUGGC-ACUACCGGcagaGgUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 59593 0.66 0.936563
Target:  5'- cGCGCCaagaaggacgguaGUGgcGGCgGcC-CCGGCGGCg -3'
miRNA:   3'- -CGUGG-------------CACuaCCGgCaGaGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 123673 0.66 0.937031
Target:  5'- gGCGCac-GAUGGCCaUCUgcgCCAGCuGCu -3'
miRNA:   3'- -CGUGgcaCUACCGGcAGA---GGUCGuCG- -5'
14595 3' -56.9 NC_003521.1 + 114480 0.66 0.927256
Target:  5'- ---aCGUGGUGGCCuUCaUCUGGguGCu -3'
miRNA:   3'- cgugGCACUACCGGcAG-AGGUCguCG- -5'
14595 3' -56.9 NC_003521.1 + 197325 0.66 0.950043
Target:  5'- gGCGCUGacgGAuguUGGCCGcCgcggCCAGCacGGCc -3'
miRNA:   3'- -CGUGGCa--CU---ACCGGCaGa---GGUCG--UCG- -5'
14595 3' -56.9 NC_003521.1 + 239671 0.66 0.937031
Target:  5'- gGCGCCGUGGcucCCGgggaCGGCAGCg -3'
miRNA:   3'- -CGUGGCACUaccGGCagagGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 128484 0.66 0.937031
Target:  5'- aGCGgCGUGA-GGCUGUgCgcgCCGGCcuGCg -3'
miRNA:   3'- -CGUgGCACUaCCGGCA-Ga--GGUCGu-CG- -5'
14595 3' -56.9 NC_003521.1 + 58837 0.66 0.937031
Target:  5'- -gGCCGUGAcguuacUGGCgCGgaugC-CCAGCAGg -3'
miRNA:   3'- cgUGGCACU------ACCG-GCa---GaGGUCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.