miRNA display CGI


Results 1 - 20 of 222 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 3' -56.9 NC_003521.1 + 2109 0.66 0.9455
Target:  5'- uGCuGCCGgugcuaccuccucUGGUcaacgucccacGGCCGccgaccugCUCCAGCAGCa -3'
miRNA:   3'- -CG-UGGC-------------ACUA-----------CCGGCa-------GAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 5485 0.68 0.872437
Target:  5'- --cCCGUuccccccuuaGAucUGGCCGUCUCggcaggaguagCAGCAGCg -3'
miRNA:   3'- cguGGCA----------CU--ACCGGCAGAG-----------GUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 10495 0.66 0.927256
Target:  5'- uGCGCCGgcgggGAUGGCgUGgccCcCCAgGCGGCg -3'
miRNA:   3'- -CGUGGCa----CUACCG-GCa--GaGGU-CGUCG- -5'
14595 3' -56.9 NC_003521.1 + 16290 0.68 0.879376
Target:  5'- gGCGCCGUgGGUGccuaCCGgC-CCGGCGGCu -3'
miRNA:   3'- -CGUGGCA-CUACc---GGCaGaGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 17005 0.66 0.931764
Target:  5'- gGCGcCCGcGGUGGCggcggcgcaggccCGUCgUCUGGCGGCc -3'
miRNA:   3'- -CGU-GGCaCUACCG-------------GCAG-AGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 17115 0.69 0.83004
Target:  5'- aCACCGUGuucgaccucaaggacGUGGaCGaguggUUCCAGCAGCg -3'
miRNA:   3'- cGUGGCAC---------------UACCgGCa----GAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 17651 0.68 0.879376
Target:  5'- aCACCGUGAUGagcgauGCgGcCUCCAGaCuGCg -3'
miRNA:   3'- cGUGGCACUAC------CGgCaGAGGUC-GuCG- -5'
14595 3' -56.9 NC_003521.1 + 17754 0.75 0.515223
Target:  5'- -gGCCGggGAacUGGCCGUaccgCCGGCGGCg -3'
miRNA:   3'- cgUGGCa-CU--ACCGGCAga--GGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 18067 0.68 0.872437
Target:  5'- cCACCGacgccGUGGCCGUagcCCAGaCGGCg -3'
miRNA:   3'- cGUGGCac---UACCGGCAga-GGUC-GUCG- -5'
14595 3' -56.9 NC_003521.1 + 19809 0.69 0.834055
Target:  5'- aGCGCCGUcgcaguucUGGCCuccuaucGUCUCCucccuucuccGGCAGCg -3'
miRNA:   3'- -CGUGGCAcu------ACCGG-------CAGAGG----------UCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 21400 0.68 0.865299
Target:  5'- aGCGCUGgGAUacGGCC--CUCUGGCAGCu -3'
miRNA:   3'- -CGUGGCaCUA--CCGGcaGAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 21774 0.66 0.927256
Target:  5'- gGCGCCGUGgcGuGCC-UgUCCguGGCGGUg -3'
miRNA:   3'- -CGUGGCACuaC-CGGcAgAGG--UCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 23624 0.67 0.916594
Target:  5'- uGCACCGccGUGGCCug--CCugGGCGGCa -3'
miRNA:   3'- -CGUGGCacUACCGGcagaGG--UCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 25654 0.72 0.700246
Target:  5'- aUACCGUGuGUGGCgaaCUCCAGCAGg -3'
miRNA:   3'- cGUGGCAC-UACCGgcaGAGGUCGUCg -5'
14595 3' -56.9 NC_003521.1 + 26402 0.72 0.680794
Target:  5'- aGCACCGUcacccacGCCGUCUCUAGC-GCc -3'
miRNA:   3'- -CGUGGCAcuac---CGGCAGAGGUCGuCG- -5'
14595 3' -56.9 NC_003521.1 + 27014 0.69 0.809356
Target:  5'- cGCACCGUGAUGuggcugcGCCGUUU-CGGCGu- -3'
miRNA:   3'- -CGUGGCACUAC-------CGGCAGAgGUCGUcg -5'
14595 3' -56.9 NC_003521.1 + 27751 0.66 0.932254
Target:  5'- aGCGCCGcGAU-GUCGUC-CCGacggcGCAGCu -3'
miRNA:   3'- -CGUGGCaCUAcCGGCAGaGGU-----CGUCG- -5'
14595 3' -56.9 NC_003521.1 + 30072 0.68 0.857965
Target:  5'- uGUGCCGUccccGccGGCCG-CUCaCGGUAGCa -3'
miRNA:   3'- -CGUGGCA----CuaCCGGCaGAG-GUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 30834 0.69 0.842736
Target:  5'- aCACgGgacgcUGGUGGCCGUCUgggCCGuccGCGGCa -3'
miRNA:   3'- cGUGgC-----ACUACCGGCAGA---GGU---CGUCG- -5'
14595 3' -56.9 NC_003521.1 + 32285 0.67 0.89895
Target:  5'- -aGCCGUGAccucGGCCGaaugggCCAGaCAGCu -3'
miRNA:   3'- cgUGGCACUa---CCGGCaga---GGUC-GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.